Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 3.0e-120 435.3 230 100.0
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 6.7e-112 407.5 230 93.5
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.3e-110 403.3 230 91.7
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.3e-110 401.0 230 91.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.7e-94 348.6 236 79.7
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.8e-93 346.3 230 76.1
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 9.1e-93 344.0 230 75.7
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.0e-92 342.8 230 76.5
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 3.5e-92 342.0 230 76.1
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.0e-91 340.5 230 74.3
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 75.7
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 75.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 76.1
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 74.8
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 5.0e-91 338.2 230 75.2
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 74.3
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.4e-90 336.7 230 73.0
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.4e-90 336.7 230 74.8
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.4e-90 336.7 230 73.9
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.9e-90 336.3 220 79.5
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.2e-90 335.5 230 74.8
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 72.2
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 74.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 73.5
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 72.6
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 9.4e-90 334.0 230 74.3
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.6e-89 333.2 230 73.0
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 3.6e-89 332.0 230 73.9
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 6.1e-89 331.3 230 73.0
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 6.1e-89 331.3 230 73.5
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 8.0e-89 330.9 230 73.5
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 71.7
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 3.0e-88 328.9 230 73.5
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 73.0
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 70.9
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.6e-87 325.9 232 72.0
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 4.4e-87 325.1 230 73.0
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 70.4
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 9.7e-87 323.9 230 71.3
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 9.7e-87 323.9 230 70.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.7e-86 323.2 230 71.7
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.7e-86 323.2 230 70.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 2.2e-86 322.8 229 72.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 2.2e-86 322.8 230 70.9
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 3.7e-86 322.0 232 71.1
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 70.0
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 6.3e-86 321.2 230 72.6
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 8.2e-86 320.9 230 72.2
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.1e-85 320.5 230 71.3
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 76.1
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 7.0e-85 317.8 230 68.7
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 7.0e-85 317.8 230 69.1
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.6e-84 315.8 230 71.3
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 4.5e-84 315.1 232 70.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.5e-84 315.1 230 69.1
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 7.7e-84 314.3 230 69.1
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.3e-83 313.5 239 67.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.2e-83 312.8 230 68.7
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 67.8
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.0e-83 311.6 252 64.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.9e-82 309.7 250 66.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 2.5e-82 309.3 263 62.7
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 3.2e-82 308.9 230 69.1
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 3.2e-82 308.9 220 69.5
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 67.0
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.2e-82 307.8 232 70.3
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 68.3
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 67.8
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.6e-81 306.6 232 68.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 67.4
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.7e-81 305.8 230 68.3
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 4.7e-81 305.1 230 68.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 8.0e-81 304.3 230 67.4
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.0e-80 303.9 230 68.7
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 65.2
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 65.2
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 65.2
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.0e-79 299.7 231 67.5
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 66.5
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 65.2
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 64.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 66.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 66.1
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 64.8
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 65.2
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 64.8
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 64.8
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.3e-78 297.0 254 62.6
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 2.8e-78 295.8 232 65.1
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.1e-77 293.9 230 67.4
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 63.9
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 63.9
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 2.4e-77 292.7 220 68.2
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 65.2
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 63.9
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 7.0e-77 291.2 231 66.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 7.0e-77 291.2 307 55.0
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 1.6e-76 290.0 230 64.3
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 66.1
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.5
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 63.0
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 6.5e-75 284.6 230 62.6
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 64.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 4.7e-73 278.5 230 60.9
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.4e-71 271.9 360 46.9
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.3e-67 260.4 214 61.7
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.8e-67 258.8 181 74.6
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.1e-65 253.1 318 48.1
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 9.8e-63 244.2 215 57.7
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.4e-61 239.6 179 69.3
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 4.1e-61 238.8 166 71.7
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 3.3e-58 229.2 230 51.3
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.3e-58 228.0 164 70.1
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 4.7e-57 225.3 164 69.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.0e-55 219.9 164 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 7.5e-55 218.0 231 52.8
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.2e-54 216.5 140 76.4
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.9e-53 213.4 230 50.4
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 5.4e-53 211.8 229 55.0
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.7e-52 209.5 141 72.3
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.3e-50 202.6 149 67.8
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.1e-49 199.9 282 44.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.2e-45 186.0 138 62.3
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.2e-44 184.1 226 44.7
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.5e-42 177.2 117 73.5
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 4.3e-42 175.6 176 54.0
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 2.8e-41 172.9 111 73.9
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.7e-41 172.2 139 64.7
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 4.0e-40 169.1 218 49.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.5e-39 167.2 241 44.8
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 3.4e-39 166.0 251 43.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 9.9e-39 164.5 139 60.4
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 6.4e-38 161.8 266 41.4
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.5e-34 149.8 118 62.7
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 3.6e-33 146.0 292 36.0
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 8.9e-32 141.4 144 49.3
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.0e-27 127.9 92 64.1
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 5.1e-27 125.6 121 57.0
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.4e-24 117.5 111 55.9
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 8.4e-22 108.2 72 72.2
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 3.5e-20 102.8 102 56.9
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 8.7e-19 98.2 71 60.6
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.6e-18 94.7 67 70.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.6e-17 92.8 125 46.4
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 1.1e-16 91.3 80 61.2
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 3.4e-15 86.3 63 61.9
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.5e-15 85.9 58 69.0
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.3e-14 84.3 125 44.0
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.8e-14 82.8 68 58.8
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.2e-13 79.3 54 74.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.1e-13 78.6 129 37.2
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.7e-12 76.6 83 51.8
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.6e-09 67.4 95 41.1
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.2e-09 65.5 38 73.7
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.4e-08 64.3 61 47.5
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 2.6e-07 60.1 41 63.4
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.0e-06 58.2 40 70.0
MD03G1213500 Malus domestica HOM05D004531 ORTHO05D246742 3.8e-06 56.2 35 77.1
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 3.8e-06 56.2 45 64.4


User provided reference genes

Program Settings