Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 3.2e-187 658.3 337 100.0
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 3.8e-164 581.6 339 88.2
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 1.2e-162 576.6 339 87.3
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 9.7e-152 540.4 339 83.8
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 2.8e-143 512.3 359 76.0
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 2.4e-142 509.2 340 78.2
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 1.6e-138 496.5 321 79.8
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 2.1e-138 496.1 321 79.4
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 3.6e-138 495.4 354 72.6
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 1.0e-137 493.8 359 72.4
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 2.0e-136 489.6 362 72.1
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 2.6e-136 489.2 359 71.0
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 5.7e-136 488.0 356 71.9
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 4.1e-134 481.9 345 73.6
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 1.6e-133 479.9 355 70.4
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 2.6e-133 479.2 355 70.1
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 5.9e-133 478.0 335 72.8
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 1.7e-132 476.5 361 70.6
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 2.2e-132 476.1 343 72.6
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 2.2e-132 476.1 356 71.9
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 2.2e-132 476.1 321 77.6
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 8.5e-132 474.2 314 76.4
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 1.5e-131 473.4 354 70.1
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 1.9e-131 473.0 329 74.8
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 2.5e-131 472.6 343 72.3
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 4.2e-131 471.9 343 73.2
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.2e-130 470.3 355 70.7
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 8.0e-130 467.6 325 74.8
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 5.2e-129 464.9 320 74.7
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 6.8e-129 464.5 354 68.9
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 6.8e-129 464.5 309 77.0
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.2e-128 463.8 320 74.4
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 2.6e-128 462.6 322 75.2
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 7.5e-128 461.1 323 74.6
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 3.1e-126 455.7 321 75.4
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 1.6e-125 453.4 352 68.5
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 2.0e-125 453.0 316 73.7
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 2.0e-125 453.0 319 73.4
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 2.7e-125 452.6 311 74.6
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 4.5e-125 451.8 380 66.3
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 4.5e-125 451.8 323 73.4
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 5.9e-125 451.4 345 68.7
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 1.7e-124 449.9 323 73.1
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 2.2e-124 449.5 341 69.2
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 2.2e-124 449.5 341 69.2
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 3.8e-124 448.7 334 71.6
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 2.5e-123 446.0 332 68.4
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 4.2e-123 445.3 325 71.7
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 2.1e-122 443.0 346 67.9
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.1e-122 443.0 307 70.7
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 2.1e-122 443.0 307 70.7
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 8.0e-122 441.0 313 71.6
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 3.0e-121 439.1 323 70.9
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 3.4e-120 435.6 317 72.2
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 3.4e-120 435.6 323 68.1
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 7.5e-120 434.5 322 71.4
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 9.8e-120 434.1 328 67.7
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 1.7e-119 433.3 323 69.0
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 3.7e-119 432.2 321 69.8
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 4.9e-119 431.8 311 72.7
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 1.1e-118 430.6 292 76.7
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 1.8e-118 429.9 356 63.8
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.1e-115 420.6 352 63.1
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 1.2e-114 417.2 279 72.4
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.6e-114 416.8 306 71.2
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 2.1e-114 416.4 265 79.6
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 2.3e-113 412.9 317 66.2
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 2.3e-113 412.9 322 68.9
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.0e-113 412.5 356 62.1
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.2e-113 411.8 356 62.1
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 1.2e-112 410.6 315 68.6
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 1.5e-112 410.2 407 57.0
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 2.0e-112 409.8 309 68.6
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 9.8e-112 407.5 314 67.8
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 6.4e-111 404.8 315 67.9
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 6.4e-111 404.8 320 64.7
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 2.4e-110 402.9 321 69.2
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 5.4e-110 401.7 315 67.6
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 5.4e-110 401.7 307 67.8
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 9.2e-110 401.0 319 64.3
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.6e-109 400.2 315 67.3
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 2.7e-109 399.4 321 64.5
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.0e-108 397.5 316 64.2
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 1.7e-108 396.7 315 66.3
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 1.7e-108 396.7 310 64.8
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 5.6e-107 391.7 319 64.9
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 9.5e-107 391.0 276 74.6
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.2e-106 390.6 240 82.1
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 5.2e-105 385.2 282 71.6
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 5.2e-105 385.2 337 57.9
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 6.8e-105 384.8 328 63.4
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.7e-103 380.2 355 59.2
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 3.7e-103 379.0 316 63.3
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 4.1e-102 375.6 298 67.4
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 1.7e-100 370.2 328 62.5
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 8.6e-100 367.9 321 61.4
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.1e-97 360.9 291 67.0
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 8.9e-97 357.8 264 66.7
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 1.7e-92 343.6 319 58.3
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 6.2e-90 335.1 322 61.2
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 6.8e-81 305.1 188 78.2
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 9.0e-57 224.9 243 53.9
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 3.5e-45 186.4 231 48.9
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.3e-44 184.5 140 67.9
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 6.7e-44 182.2 331 38.4
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.5e-43 181.0 304 36.5
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 1.2e-40 171.4 302 35.4
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 3.4e-40 169.9 303 37.0
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.3e-39 167.9 339 36.9
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 7.2e-38 162.2 313 31.9
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 3.3e-35 153.3 136 60.3
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 2.8e-34 150.2 248 41.9
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.7e-31 141.0 221 45.2
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 3.6e-29 133.3 161 50.9
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 5.0e-23 112.8 169 46.7
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 9.4e-22 108.6 72 73.6


User provided reference genes

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