Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018194 Sechium edule HOM05D002924 ORTHO05D028993 2.2e-58 228.8 119 100.0
ClCG03G006790 Citrullus lanatus HOM05D002924 ORTHO05D028993 1.9e-17 92.8 116 48.3
CsaV3_1G032370 Cucumis sativus L. HOM05D065241 ORTHO05D028993 7.2e-17 90.9 123 51.2
MELO3C002741.2 Cucumis melo HOM05D065241 ORTHO05D028993 1.1e-14 83.6 119 46.2
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.7e-13 78.6 116 46.6
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.7e-13 78.6 116 46.6
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.1e-12 77.0 116 45.7
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 3.4e-11 72.0 128 42.2
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 6.5e-10 67.8 120 41.7
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 8.5e-10 67.4 119 44.5
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 2.5e-09 65.9 129 36.4
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 3.2e-09 65.5 121 37.2
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 3.2e-09 65.5 120 40.0
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 5.5e-09 64.7 122 40.2
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 7.2e-09 64.3 130 38.5
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 9.4e-09 63.9 125 39.2
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 9.4e-09 63.9 118 41.5
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 9.4e-09 63.9 127 38.6
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 1.2e-08 63.5 129 37.2
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.6e-08 63.2 138 39.1
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 1.6e-08 63.2 131 35.9
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.1e-08 62.8 119 42.9
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 2.7e-08 62.4 134 38.8
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.7e-08 62.4 122 41.0
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 2.7e-08 62.4 121 37.2
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 2.7e-08 62.4 119 42.0
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.7e-08 62.4 122 41.0
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.6e-08 62.0 118 44.1
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 6.1e-08 61.2 118 39.0
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 7.9e-08 60.8 130 37.7
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 1.0e-07 60.5 124 40.3
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 1.0e-07 60.5 119 40.3
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.4e-07 60.1 117 38.5
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 1.8e-07 59.7 117 37.6
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 2.3e-07 59.3 133 37.6
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 3.0e-07 58.9 130 36.9
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 3.0e-07 58.9 131 41.2
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 3.0e-07 58.9 129 36.4
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 3.9e-07 58.5 151 35.1
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 3.9e-07 58.5 130 38.5
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.9e-07 58.5 121 41.3
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.9e-07 58.5 121 41.3
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 3.9e-07 58.5 131 38.2
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 5.1e-07 58.2 122 38.5
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 5.1e-07 58.2 119 39.5
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 5.1e-07 58.2 119 39.5
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 5.1e-07 58.2 114 38.6
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 6.7e-07 57.8 120 37.5
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 6.7e-07 57.8 122 39.3
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 6.7e-07 57.8 117 38.5
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 6.7e-07 57.8 128 36.7
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 8.8e-07 57.4 118 39.0
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.8e-07 57.4 118 42.4
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 8.8e-07 57.4 127 40.9
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 8.8e-07 57.4 122 35.2
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 8.8e-07 57.4 119 40.3
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.1e-06 57.0 75 46.7
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 1.5e-06 56.6 120 34.2
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 1.5e-06 56.6 136 36.8
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 1.5e-06 56.6 120 37.5
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.0e-06 56.2 131 37.4
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.6e-06 55.8 75 46.7
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.6e-06 55.8 118 42.4
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 2.6e-06 55.8 129 39.5
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 2.6e-06 55.8 117 36.8
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 2.6e-06 55.8 126 37.3
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 3.3e-06 55.5 131 33.6
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 3.3e-06 55.5 128 35.2
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 3.3e-06 55.5 126 42.1
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.3e-06 55.5 109 37.6
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.3e-06 55.5 108 38.9
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 3.3e-06 55.5 139 34.5
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.4e-06 55.1 131 38.9
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 4.4e-06 55.1 128 37.5
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 4.4e-06 55.1 120 34.2
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 5.7e-06 54.7 119 37.0
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 5.7e-06 54.7 75 45.3
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 5.7e-06 54.7 131 33.6
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 5.7e-06 54.7 112 38.4
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 5.7e-06 54.7 133 35.3
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 5.7e-06 54.7 75 50.7
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 7.4e-06 54.3 116 38.8
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 7.4e-06 54.3 82 43.9
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 7.4e-06 54.3 116 37.1
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 7.4e-06 54.3 131 36.6
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 7.4e-06 54.3 131 36.6
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 7.4e-06 54.3 127 37.0
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 9.7e-06 53.9 119 38.7


User provided reference genes

Program Settings