Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.3e-165 585.5 301 100.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.1e-142 509.2 299 88.6
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 4.8e-142 508.1 299 87.0
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 2.7e-129 465.7 270 87.8
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.4e-112 410.2 301 72.8
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 6.3e-110 401.4 301 71.1
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 7.9e-105 384.4 301 69.1
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.0e-104 384.0 303 68.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.6e-103 379.4 331 65.3
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 4.4e-103 378.6 324 64.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.4e-103 378.6 336 66.1
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.3e-102 377.1 300 68.0
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.8e-102 375.9 326 65.3
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 4.8e-102 375.2 300 66.7
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 4.8e-102 375.2 300 68.0
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.4e-101 373.6 306 65.4
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 4.1e-101 372.1 299 69.6
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.3e-101 371.7 230 82.6
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 6.9e-101 371.3 302 66.2
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-100 370.2 229 83.0
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.9e-100 368.2 229 82.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.0e-99 367.5 300 66.7
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 2.2e-99 366.3 300 66.7
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 2.2e-99 366.3 331 64.0
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.2e-99 366.3 314 65.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-99 366.3 304 67.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-99 366.3 304 67.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.2e-99 366.3 335 62.1
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.1e-98 364.0 302 66.9
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.9e-98 363.2 330 63.3
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.9e-98 363.2 237 79.3
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.2e-98 362.5 339 61.7
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.4e-98 360.9 339 61.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.7e-97 359.4 332 61.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 4.7e-97 358.6 244 77.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.1e-97 358.2 302 67.2
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.8e-96 356.7 269 69.5
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.9e-96 355.5 303 65.3
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 6.7e-96 354.8 226 81.4
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 2.0e-95 353.2 224 81.7
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.6e-95 352.8 230 78.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.3e-95 352.4 224 81.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.4e-95 352.1 327 62.4
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.4e-95 351.3 230 77.8
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-94 349.7 230 76.5
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-94 349.7 230 77.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.8e-94 349.4 269 68.4
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 6.3e-94 348.2 229 79.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 8.2e-94 347.8 226 80.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.2e-94 347.8 230 77.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.1e-93 347.4 240 75.8
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.1e-93 347.4 229 77.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.4e-93 347.1 322 60.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.4e-93 347.1 224 79.5
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.4e-93 347.1 335 58.8
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.8e-93 346.7 230 79.6
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.4e-93 346.3 220 80.5
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.1e-93 345.9 331 61.6
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 5.3e-93 345.1 209 84.7
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.0e-93 344.7 230 77.4
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 9.1e-93 344.4 225 80.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 9.1e-93 344.4 335 60.6
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 4.5e-92 342.0 220 79.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 7.7e-92 341.3 225 80.0
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 7.7e-92 341.3 231 76.6
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.7e-91 340.1 249 73.5
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.9e-91 339.3 234 74.4
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.9e-91 339.3 276 67.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.5e-91 338.2 221 79.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 6.5e-91 338.2 272 67.6
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 8.5e-91 337.8 226 76.5
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.1e-90 337.4 221 78.3
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.1e-90 337.4 272 67.3
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.5e-90 337.0 225 78.7
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-90 337.0 322 61.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-90 337.0 322 61.5
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.5e-90 337.0 221 79.2
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.9e-90 336.7 316 61.7
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-90 336.7 327 60.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.5e-90 336.3 230 76.1
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.5e-90 336.3 227 77.1
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 3.2e-90 335.9 230 75.7
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 3.2e-90 335.9 294 64.6
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 4.2e-90 335.5 224 78.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 4.2e-90 335.5 224 78.1
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 5.5e-90 335.1 231 76.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.5e-90 335.1 232 77.6
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 5.5e-90 335.1 231 76.2
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 5.5e-90 335.1 300 61.0
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 9.4e-90 334.3 322 61.2
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 9.4e-90 334.3 329 60.2
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.2e-89 334.0 221 77.8
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.1e-89 333.2 228 75.0
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.7e-89 332.8 327 59.3
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 3.6e-89 332.4 330 59.7
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 4.7e-89 332.0 221 76.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.7e-89 332.0 219 79.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.1e-89 331.6 228 75.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 8.0e-89 331.3 221 78.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 8.0e-89 331.3 231 74.9
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.8e-88 330.1 224 75.0
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.8e-88 330.1 226 76.5
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.2e-87 327.4 231 74.0
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 2.6e-87 326.2 210 79.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.7e-86 323.6 241 71.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 2.2e-86 323.2 231 73.2
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.8e-86 322.8 220 76.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 3.7e-86 322.4 241 70.1
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.8e-86 322.0 221 76.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.4e-85 320.5 220 75.9
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.4e-85 319.7 318 61.0
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-83 314.3 219 74.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.2e-83 313.2 314 59.6
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.9e-83 312.8 228 71.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.8e-83 312.4 231 70.6
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.1e-82 310.8 222 73.9
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.5e-82 309.7 221 71.9
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.0e-80 302.8 222 70.3
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.0e-79 300.1 231 69.3
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.6e-79 299.7 208 74.0
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.5e-79 298.1 222 70.7
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 8.3e-78 294.7 219 69.4
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 5.9e-76 288.5 177 85.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.7e-75 287.0 177 81.9
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.0e-71 273.5 169 82.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.5e-71 271.6 190 75.8
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.6e-68 263.8 271 56.5
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 4.5e-68 262.3 271 56.8
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.8e-68 261.5 186 74.2
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.0e-67 261.2 240 62.5
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-67 260.4 166 80.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.1e-66 257.7 211 64.9
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.7e-65 252.3 210 67.6
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.2e-64 248.8 196 69.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.5e-63 247.3 351 44.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.6e-63 246.5 190 71.6
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-61 241.1 173 74.0
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-61 241.1 227 59.0
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-61 241.1 227 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 2.3e-59 233.4 190 66.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.0e-59 233.0 220 59.1
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.9e-54 215.7 158 72.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 5.4e-53 212.2 184 60.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 9.2e-53 211.5 185 58.4
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 7.3e-50 201.8 185 58.4
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.8e-48 197.2 234 50.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.6e-44 182.6 153 62.7
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.1e-32 143.3 263 37.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.8e-30 136.3 241 36.5
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.5e-23 114.4 68 80.9
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.1e-21 108.2 210 34.3
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.1e-17 94.0 195 31.8
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.1e-16 90.1 236 31.4
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.6e-15 87.0 61 68.9
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.2e-14 84.0 227 31.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.1e-13 79.0 46 87.0
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.9e-10 70.9 41 80.5
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.3e-09 68.2 42 69.0
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.6e-09 67.8 55 61.8
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.0e-08 63.2 188 31.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 5.8e-07 59.3 181 29.8
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 8.4e-06 55.5 51 58.8


User provided reference genes

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