Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 5.9e-71 270.8 138 100.0
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 3.6e-52 208.4 136 77.9
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.1e-48 196.8 122 80.3
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 5.9e-39 164.5 109 73.4
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.2e-18 97.1 138 45.7
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 1.5e-18 96.7 122 49.2
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.5e-18 96.7 128 43.8
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 2.0e-18 96.3 128 44.5
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 3.4e-18 95.5 141 45.4
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 5.8e-18 94.7 117 46.2
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 1.7e-17 93.2 123 48.0
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 2.2e-17 92.8 127 40.2
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 3.7e-17 92.0 127 43.3
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 4.9e-17 91.7 108 46.3
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 6.4e-17 91.3 142 43.7
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 8.3e-17 90.9 138 45.7
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.1e-16 90.5 143 41.3
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 2.4e-16 89.4 125 47.2
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.4e-16 88.2 130 40.8
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 7.0e-16 87.8 130 40.8
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.2e-15 87.0 130 40.0
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 2.0e-15 86.3 124 43.5
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 6.0e-15 84.7 140 40.7
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 1.0e-14 84.0 123 39.0
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 1.3e-14 83.6 124 41.1
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 2.3e-14 82.8 120 40.8
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.0e-14 82.4 134 41.8
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 3.9e-14 82.0 132 40.2
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 6.6e-14 81.3 99 47.5
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 8.6e-14 80.9 140 40.0
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 8.6e-14 80.9 132 40.2
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.1e-13 80.5 131 38.9
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 3.3e-13 79.0 130 44.6
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 3.3e-13 79.0 114 43.9
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 7.3e-13 77.8 123 40.7
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 9.5e-13 77.4 123 39.0
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.2e-12 77.0 127 38.6
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.6e-12 76.6 129 41.9
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.6e-12 76.6 125 41.6
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 2.1e-12 76.3 102 45.1
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 2.1e-12 76.3 119 40.3
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 2.8e-12 75.9 141 34.8
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.6e-12 75.5 125 41.6
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 3.6e-12 75.5 126 38.9
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 4.7e-12 75.1 133 39.1
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 6.2e-12 74.7 111 43.2
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 1.1e-11 73.9 143 37.1
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.1e-11 73.9 128 42.2
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 1.8e-11 73.2 117 37.6
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 2.3e-11 72.8 110 44.5
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 3.1e-11 72.4 115 38.3
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 5.2e-11 71.6 123 39.8
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 6.8e-11 71.2 118 33.9
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 8.9e-11 70.9 115 38.3
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 1.2e-10 70.5 113 36.3
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 1.2e-10 70.5 113 36.3
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 1.2e-10 70.5 113 36.3
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.2e-10 70.5 134 35.8
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 1.2e-10 70.5 134 41.0
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.5e-10 70.1 147 35.4
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.5e-10 70.1 121 38.0
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 1.5e-10 70.1 123 40.7
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.6e-10 69.3 103 41.7
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 3.4e-10 68.9 141 35.5
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 3.4e-10 68.9 99 43.4
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 5.8e-10 68.2 122 34.4
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 7.5e-10 67.8 151 31.1
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 9.8e-10 67.4 126 38.9
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 9.8e-10 67.4 117 37.6
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 1.3e-09 67.0 132 35.6
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.3e-09 67.0 130 36.9
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 1.7e-09 66.6 142 33.1
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 2.9e-09 65.9 142 33.8
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 3.7e-09 65.5 101 35.6
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 3.7e-09 65.5 132 34.1
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 6.4e-09 64.7 130 36.2
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 8.3e-09 64.3 108 36.1
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 8.3e-09 64.3 120 34.2
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.1e-08 63.9 119 37.8
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 1.1e-08 63.9 110 38.2
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 1.4e-08 63.5 145 31.7
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 2.4e-08 62.8 107 40.2
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 3.2e-08 62.4 136 33.8
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 3.2e-08 62.4 118 38.1
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 3.2e-08 62.4 102 37.3
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 5.4e-08 61.6 110 37.3
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 5.4e-08 61.6 145 33.8
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 5.4e-08 61.6 101 38.6
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 7.1e-08 61.2 120 36.7
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 1.2e-07 60.5 99 40.4
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 1.2e-07 60.5 120 32.5
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.6e-07 60.1 115 38.3
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 2.7e-07 59.3 118 37.3
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 2.7e-07 59.3 111 35.1
Ca_00842_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 4.6e-07 58.5 105 38.1
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 6.0e-07 58.2 123 35.0
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 6.0e-07 58.2 123 35.0
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 6.0e-07 58.2 123 35.0
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 6.0e-07 58.2 125 33.6
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.3e-06 57.0 121 34.7
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 1.3e-06 57.0 116 32.8
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 1.7e-06 56.6 123 35.0
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 1.7e-06 56.6 131 31.3
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 2.3e-06 56.2 132 31.8
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 2.3e-06 56.2 117 37.6
TPR.G26337 Trifolium pratense HOM05D005932 ORTHO05D006213 2.3e-06 56.2 108 36.1
Glyma.09G024200 Glycine max HOM05D005932 ORTHO05D006213 3.0e-06 55.8 141 33.3
EL10Ac9g21553 Beta vulgaris HOM05D026734 ORTHO05D006213 3.9e-06 55.5 93 37.6
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 5.1e-06 55.1 115 36.5
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 6.6e-06 54.7 133 28.6
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 6.6e-06 54.7 112 33.0
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 6.6e-06 54.7 112 33.0
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 6.6e-06 54.7 126 34.9
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 6.6e-06 54.7 105 33.3
ATR0165G002 Amborella trichopoda HOM05D005932 ORTHO05D006213 8.6e-06 54.3 105 34.3
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 8.6e-06 54.3 80 41.2


User provided reference genes

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