Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 9.2e-51 203.4 110 100.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.6e-26 121.3 70 91.4
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 7.6e-21 104.0 72 80.6
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.1e-19 100.1 75 77.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.2e-19 98.6 70 72.9
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.6e-18 94.7 70 68.6
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.7e-17 92.8 70 70.0
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.7e-17 92.8 70 70.0
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.3e-17 92.4 70 70.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.3e-17 92.4 70 72.9
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.0e-17 92.0 70 70.0
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.9e-17 91.7 70 65.7
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.9e-17 91.7 70 65.7
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.6e-17 90.9 78 62.8
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.6e-17 90.9 70 70.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.5e-16 89.7 70 68.6
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.5e-16 89.7 70 68.6
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.9e-16 89.4 62 75.8
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.5e-16 89.0 72 66.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.5e-16 89.0 70 70.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.3e-16 88.2 71 70.4
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.3e-16 88.2 70 71.4
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.3e-16 88.2 71 66.2
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 7.3e-16 87.4 68 64.7
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 9.6e-16 87.0 59 76.3
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.6e-16 87.0 62 74.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.6e-16 87.0 62 74.2
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.2e-15 86.7 68 67.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.2e-15 86.7 70 67.1
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.2e-15 86.7 70 67.1
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.2e-15 86.7 54 81.5
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.1e-15 85.9 70 67.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.1e-15 85.9 70 67.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.1e-15 85.9 63 71.4
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.1e-15 85.9 70 68.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.1e-15 85.9 54 81.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.8e-15 85.5 68 66.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.8e-15 85.5 66 68.2
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.8e-15 85.5 70 67.1
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.8e-15 85.5 70 65.7
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.6e-15 85.1 72 68.1
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.6e-15 85.1 57 77.2
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.6e-15 85.1 57 77.2
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 3.6e-15 85.1 57 77.2
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.6e-15 85.1 70 65.7
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.2e-15 84.3 63 69.8
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 6.2e-15 84.3 55 78.2
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.1e-15 84.0 69 65.2
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.1e-15 84.0 70 67.1
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.1e-15 84.0 70 67.1
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.4e-14 83.2 70 65.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.8e-14 82.8 62 71.0
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.8e-14 82.8 56 76.8
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.1e-14 82.0 70 64.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.1e-14 82.0 53 77.4
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.1e-14 82.0 53 77.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.0e-14 81.6 55 76.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 5.2e-14 81.3 70 64.3
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 5.2e-14 81.3 78 60.3
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 5.2e-14 81.3 70 62.9
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 6.9e-14 80.9 55 74.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 9.0e-14 80.5 55 74.5
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 9.0e-14 80.5 72 61.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.2e-13 80.1 63 66.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.2e-13 80.1 53 75.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.2e-13 80.1 54 75.9
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.5e-13 79.7 70 64.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-13 79.7 59 71.2
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.5e-13 79.7 70 62.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.0e-13 79.3 54 75.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.0e-13 79.3 54 75.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.0e-13 79.3 54 75.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.0e-13 79.3 59 71.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.0e-13 79.3 63 69.8
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.6e-13 79.0 54 74.1
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.6e-13 79.0 70 62.9
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-13 79.0 54 72.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-13 79.0 54 72.2
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-13 79.0 54 72.2
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-13 79.0 54 72.2
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.4e-13 78.6 53 71.7
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.4e-13 78.6 54 74.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-13 78.6 54 72.2
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 4.4e-13 78.2 54 74.1
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.4e-13 78.2 53 71.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 5.8e-13 77.8 54 72.2
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.8e-13 77.8 71 59.2
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-13 77.8 54 70.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-13 77.8 54 70.4
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 7.6e-13 77.4 70 62.9
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.6e-13 77.4 54 70.4
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.6e-13 77.4 60 68.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 7.6e-13 77.4 54 72.2
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 7.6e-13 77.4 53 75.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 9.9e-13 77.0 70 64.3
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 9.9e-13 77.0 70 64.3
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.3e-12 76.6 72 61.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-12 76.6 54 70.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-12 76.6 55 69.1
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.3e-12 76.6 54 72.2
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.7e-12 76.3 68 61.8
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.7e-12 76.3 55 67.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 68.5
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 68.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 68.5
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 68.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 68.5
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 70.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 70.4
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.2e-12 75.9 54 72.2
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.2e-12 75.9 55 69.1
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.9e-12 75.5 54 72.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.9e-12 75.5 54 72.2
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 2.9e-12 75.5 58 70.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.8e-12 75.1 54 68.5
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.8e-12 75.1 55 69.1
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 4.9e-12 74.7 55 72.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.9e-12 74.7 60 66.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.9e-12 74.7 70 60.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.4e-12 74.3 53 67.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 6.4e-12 74.3 53 69.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.4e-12 74.3 50 78.0
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 8.4e-12 73.9 72 58.3
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 8.4e-12 73.9 72 58.3
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 8.4e-12 73.9 72 58.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.4e-12 73.9 54 66.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 8.4e-12 73.9 54 68.5
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.1e-11 73.6 70 61.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.9e-11 72.8 72 58.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.9e-11 72.8 56 66.1
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.2e-11 72.0 53 71.7
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 3.2e-11 72.0 72 58.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.2e-11 71.6 72 56.9
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 4.2e-11 71.6 68 58.8
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 5.4e-11 71.2 50 70.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 7.1e-11 70.9 68 60.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-10 68.2 49 71.4
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-10 68.2 49 71.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 7.3e-08 60.8 54 59.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-07 59.7 54 59.3
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-07 59.3 38 81.6
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-07 59.3 38 81.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-07 58.9 54 57.4
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.8e-07 58.9 54 55.6
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.1e-06 55.5 70 47.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.3e-06 54.7 52 57.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 6.9e-06 54.3 54 46.3


User provided reference genes

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