Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 0.0e+00 1099.3 559 100.0
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 9.8e-242 840.1 562 79.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 8.9e-227 790.4 522 78.4
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.6e-226 788.9 513 77.4
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.1e-222 774.6 573 71.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.3e-221 771.5 562 71.9
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.2e-218 763.5 550 71.8
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.3e-214 750.0 508 73.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.0e-190 669.1 485 67.6
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.9e-190 668.7 491 67.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.1e-189 667.2 525 63.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.5e-189 666.0 484 68.2
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 4.3e-189 665.2 519 63.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 9.6e-189 664.1 483 67.9
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.7e-188 662.1 521 62.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.4e-187 659.4 515 64.3
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 6.9e-187 657.9 481 67.6
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.2e-186 657.1 485 67.6
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.5e-186 655.2 485 66.0
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.3e-185 653.7 515 63.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.3e-185 653.7 515 63.9
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.8e-185 652.1 528 61.6
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.9e-185 651.7 510 62.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 6.5e-185 651.4 524 62.0
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.4e-184 650.2 483 65.4
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.9e-184 649.8 531 62.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.9e-184 649.8 484 65.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.7e-183 646.0 466 66.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 4.6e-183 645.2 511 64.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.0e-182 642.5 483 65.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.9e-182 642.1 567 59.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.1e-181 640.6 483 64.6
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.5e-181 639.4 547 61.2
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.4e-181 637.9 483 65.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 9.7e-181 637.5 484 64.9
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.3e-180 637.1 529 60.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.2e-180 636.3 484 64.7
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.2e-180 636.3 523 61.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.8e-180 636.0 487 63.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.3e-180 634.8 483 64.0
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.4e-179 633.6 483 64.2
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-179 633.3 565 57.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.4e-179 632.9 540 60.0
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 5.3e-179 631.7 502 62.4
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.0e-178 629.8 484 63.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 5.9e-178 628.2 498 64.5
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.7e-178 627.9 529 60.3
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-177 627.5 508 60.6
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 6.5e-177 624.8 487 61.8
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 6.5e-177 624.8 485 63.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.1e-176 624.0 484 62.8
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 3.0e-174 615.9 526 59.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 6.7e-174 614.8 498 61.4
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-173 613.2 498 61.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.5e-173 612.8 481 62.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 8.2e-172 607.8 487 61.8
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.8e-171 606.7 527 59.0
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.1e-171 605.9 481 62.6
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 6.9e-171 604.7 484 61.6
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 6.9e-171 604.7 482 61.2
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.4e-170 602.4 485 61.0
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 3.8e-169 599.0 486 59.9
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.2e-167 594.0 528 56.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.7e-167 592.8 486 61.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.3e-166 589.7 481 62.4
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-165 587.4 486 59.3
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-165 586.6 473 61.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.7e-165 585.1 500 60.0
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.3e-164 583.9 557 54.6
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.3e-164 583.9 529 58.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.8e-163 580.1 483 59.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 7.0e-163 578.2 580 53.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.0e-161 574.3 487 58.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-161 573.2 539 53.2
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.1e-160 570.9 487 58.1
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.8e-158 563.5 419 66.8
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.7e-156 555.8 485 58.4
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.5e-154 549.3 486 55.6
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.5e-152 543.1 486 57.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 4.2e-152 542.3 485 57.9
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-151 540.0 486 56.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-151 539.7 532 53.4
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 6.1e-151 538.5 492 55.1
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.4e-150 537.3 487 57.1
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-149 534.3 511 53.2
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-149 532.7 494 55.5
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-149 532.7 485 55.9
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.4e-149 532.3 486 54.3
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 9.7e-149 531.2 488 54.7
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.2e-148 530.0 490 54.7
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.8e-148 529.6 530 54.0
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 8.3e-148 528.1 489 55.0
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-147 527.3 468 57.1
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-147 526.9 536 53.7
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 8.5e-145 518.1 484 55.8
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.1e-144 517.7 494 52.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.6e-143 512.7 563 49.4
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.6e-141 506.5 429 60.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.8e-139 500.4 559 53.7
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-139 500.4 498 51.4
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-137 494.2 493 52.3
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 8.6e-137 491.5 453 54.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.7e-133 478.8 395 62.3
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.3e-132 475.3 495 51.1
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-131 473.4 454 55.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 9.5e-128 461.5 394 59.4
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-126 458.0 489 49.7
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.0e-126 456.1 480 50.2
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-126 456.1 493 51.1
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.8e-125 452.2 493 50.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 5.8e-125 452.2 385 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 2.2e-124 450.3 543 44.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 4.9e-124 449.1 500 47.2
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.3e-120 436.0 396 54.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.1e-119 433.7 328 66.5
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 9.2e-115 418.3 502 43.8
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.5e-114 416.4 457 49.5
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.3e-113 413.7 322 63.7
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 4.0e-110 402.9 393 56.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.4e-109 399.4 343 59.2
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.4e-107 393.7 277 71.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.4e-107 392.5 288 66.7
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.6e-106 389.4 343 58.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.5e-104 383.6 414 51.9
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.8e-102 377.5 332 59.0
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.4e-100 369.0 341 54.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.4e-99 367.9 331 58.3
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.2e-95 352.4 642 33.5
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 4.0e-94 349.7 439 47.6
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-83 313.2 225 61.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.6e-80 302.8 216 61.6
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.8e-79 299.7 275 54.2
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.0e-76 292.0 453 40.4
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 3.3e-72 276.9 598 32.8
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-67 261.5 199 64.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.5e-64 250.8 485 34.8
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.7e-64 249.6 346 39.9
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-60 237.3 265 48.7
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.3e-56 223.8 194 57.2
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.4e-56 222.6 194 57.7
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.8e-55 220.7 144 69.4
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.4e-53 213.8 144 66.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 5.9e-53 213.0 235 47.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-51 208.8 158 62.7
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.8e-49 201.4 144 63.9
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.3e-47 193.0 195 48.7
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-43 182.2 145 60.0
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 3.6e-42 177.2 134 62.7
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-39 168.3 178 53.9
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.8e-39 167.5 118 64.4
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-36 157.9 128 57.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.7e-34 151.0 202 41.6
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.7e-32 143.3 170 42.4
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-30 137.5 108 58.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-29 135.2 140 53.6
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.7e-29 134.4 176 40.3
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-19 102.4 87 54.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.8e-18 97.8 76 56.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 9.2e-14 82.8 74 54.1
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 7.8e-13 79.7 74 55.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.3e-12 78.2 67 49.3
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 8.3e-07 59.7 53 52.8


User provided reference genes

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