Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.4e-130 467.6 230 100.0
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.3e-120 435.6 230 90.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.4e-117 426.4 230 87.8
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.5e-114 415.6 230 86.1
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.3e-104 382.5 232 80.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 6.7e-104 380.9 232 79.3
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.5e-103 379.8 226 79.2
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.5e-103 379.8 226 79.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.3e-103 378.6 234 79.5
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.2e-102 375.9 225 80.4
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.8e-102 374.8 225 80.0
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 8.2e-102 374.0 226 78.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.2e-102 374.0 234 79.1
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.1e-101 373.6 226 78.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-101 372.9 234 78.6
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.8e-101 372.9 231 78.8
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.1e-101 371.7 225 77.8
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 4.1e-101 371.7 234 78.6
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.5e-100 369.8 226 77.9
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.0e-100 369.4 232 76.3
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.0e-100 369.4 233 76.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.0e-100 369.4 226 77.9
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.6e-100 369.0 226 77.4
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.5e-100 368.2 226 76.1
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.5e-100 368.2 226 76.1
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.9e-100 367.9 233 76.8
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-99 367.1 226 77.9
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.3e-99 366.7 233 77.3
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.7e-99 366.3 233 75.5
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.5e-99 364.0 219 80.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.4e-98 363.2 218 77.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.9e-98 362.8 226 76.1
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.5e-98 362.5 231 77.1
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 2.5e-98 362.5 232 74.1
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.5e-98 362.5 233 74.2
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.2e-98 362.1 232 75.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.2e-98 362.1 233 75.5
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 4.2e-98 361.7 219 79.5
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 4.2e-98 361.7 229 76.0
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.5e-98 361.3 233 75.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-97 360.1 225 76.9
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.1e-97 359.4 232 75.0
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-97 359.4 227 75.3
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.7e-97 359.0 235 73.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-97 358.6 232 75.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.7e-97 358.2 231 73.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 6.1e-97 357.8 226 76.1
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 6.1e-97 357.8 233 73.8
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 7.9e-97 357.5 247 73.3
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.8e-96 356.3 255 70.6
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.0e-96 355.5 226 73.5
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 3.0e-96 355.5 232 73.7
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 8.8e-96 354.0 232 73.3
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.5e-95 353.2 224 74.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.3e-95 352.1 232 73.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.3e-95 352.1 228 71.9
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.3e-95 352.1 230 73.5
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.3e-95 352.1 232 72.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.4e-95 351.7 249 72.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.7e-95 351.3 249 72.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 9.7e-95 350.5 213 79.3
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.7e-95 350.5 218 74.3
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 9.7e-95 350.5 232 72.4
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.8e-94 349.0 235 75.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.8e-94 349.0 235 75.3
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.7e-94 348.6 234 72.6
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.7e-94 348.6 232 72.4
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.7e-94 348.6 232 72.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 8.2e-94 347.4 232 72.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.2e-94 347.4 232 72.8
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.4e-93 346.7 233 70.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 5.3e-93 344.7 226 73.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.3e-93 344.7 225 72.0
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 9.1e-93 344.0 234 71.4
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 9.1e-93 344.0 221 72.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 9.1e-93 344.0 221 72.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.1e-93 344.0 226 72.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 9.1e-93 344.0 221 74.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.2e-92 343.6 233 70.4
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.5e-92 343.2 213 76.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.0e-92 342.8 235 74.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 3.5e-92 342.0 230 70.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 5.9e-92 341.3 230 70.4
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 7.7e-92 340.9 214 74.3
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 7.7e-92 340.9 233 70.0
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.0e-91 340.5 217 75.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.0e-91 340.5 214 76.6
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.3e-91 340.1 218 76.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.3e-91 340.1 220 73.2
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.0e-91 338.2 214 73.8
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.0e-91 338.2 219 72.6
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.0e-91 338.2 237 71.3
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.5e-90 335.9 238 68.1
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.2e-90 335.5 234 70.1
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 4.2e-90 335.1 214 72.9
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 4.2e-90 335.1 214 72.9
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 5.5e-90 334.7 231 70.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.2e-89 333.6 214 72.9
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 4.7e-89 331.6 234 67.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.7e-89 331.6 229 70.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.7e-89 331.6 229 70.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.4e-88 330.1 234 67.1
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.8e-88 329.7 213 74.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-88 329.3 225 72.0
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 6.7e-88 327.8 226 69.9
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.1e-87 327.0 231 68.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.6e-87 325.9 236 69.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 7.4e-87 324.3 235 68.9
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.7e-86 323.2 225 68.4
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 4.8e-86 321.6 210 72.9
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 8.2e-86 320.9 229 69.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 4.1e-85 318.5 231 68.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.1e-85 318.5 274 59.5
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 7.0e-85 317.8 226 66.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.2e-84 317.0 227 68.3
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.2e-84 317.0 232 68.1
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.9e-83 312.4 213 69.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.1e-82 310.5 242 63.2
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.5e-82 310.1 235 65.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 8.8e-80 300.8 225 68.4
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.8e-78 295.8 237 63.3
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.1e-77 292.0 180 74.4
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 7.0e-77 291.2 248 60.9
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 5.9e-76 288.1 236 64.0
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.3e-75 287.0 179 78.2
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-74 283.1 193 73.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.8e-72 276.6 212 63.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 5.4e-69 265.0 232 60.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 2.7e-68 262.7 211 57.3
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-67 259.6 161 77.6
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.3e-67 259.6 232 58.2
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.0e-65 251.1 192 66.7
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.4e-64 250.4 158 72.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.2e-60 237.3 160 68.8
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 3.3e-58 229.2 166 69.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.9e-54 216.1 224 50.0
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 6.4e-54 214.9 145 75.9
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.1e-53 214.2 227 50.2
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.2e-52 210.7 185 58.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.3e-51 207.2 215 51.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.6e-51 204.9 215 50.7
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.5e-50 203.0 173 60.7
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.4e-46 188.3 120 72.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 8.6e-43 177.9 124 63.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.3e-42 175.6 215 45.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.9e-38 162.9 99 74.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-35 154.1 157 53.5
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.0e-35 152.9 218 44.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.1e-35 152.1 92 76.1
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-32 144.4 152 48.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.1e-28 130.2 211 38.4
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 7.3e-26 121.7 103 61.2
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.8e-25 119.0 94 67.0
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 7.6e-23 111.7 202 31.2
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-21 107.8 89 57.3
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.4e-21 107.5 66 72.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.0e-19 101.3 60 80.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-19 101.3 60 80.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-19 99.4 76 69.7
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-18 97.4 76 68.4
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.3e-18 96.3 72 69.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.1e-17 93.6 73 64.4
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.2e-17 92.0 123 42.3
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 3.4e-15 86.3 233 29.6
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.8e-14 82.8 59 66.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 6.7e-11 72.0 141 32.6
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 7.4e-10 68.6 51 74.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 8.1e-09 65.1 38 71.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-08 63.5 45 66.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.2e-07 61.2 38 84.2
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.0e-07 60.5 42 69.0
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.6e-07 60.1 52 63.5


User provided reference genes

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