Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.8e-179 632.5 320 100.0
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 6.2e-140 501.1 321 81.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.8e-135 484.2 326 77.9
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-133 480.3 318 78.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.2e-132 476.9 319 76.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.1e-132 474.2 319 76.8
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.4e-91 340.5 316 55.4
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.9e-91 338.2 319 57.4
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.6e-90 336.3 321 58.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.5e-90 335.5 318 59.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.5e-89 331.6 318 56.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 6.5e-89 331.6 322 56.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.2e-87 327.4 323 52.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.1e-87 326.6 318 54.1
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.3e-86 323.2 318 53.5
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.5e-85 320.5 318 55.0
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.3e-85 319.3 318 53.1
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 7.4e-85 318.2 322 53.4
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 9.7e-85 317.8 323 55.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.2e-84 316.6 317 52.7
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.8e-84 315.5 323 52.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-83 313.5 337 52.8
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-83 312.8 328 53.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 9.1e-83 311.2 318 52.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 5.9e-82 308.5 307 54.7
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.7e-81 307.0 305 54.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.9e-80 303.5 316 51.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.2e-80 302.8 315 51.4
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.5e-80 302.0 326 50.3
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.2e-79 300.8 365 48.5
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.6e-79 300.4 317 53.0
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.7e-79 298.9 316 50.3
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.7e-79 298.9 326 49.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.7e-79 298.9 316 50.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.0e-78 297.7 317 51.1
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-78 297.4 322 49.1
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.4e-78 297.4 295 55.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 3.9e-78 295.8 313 51.4
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.9e-78 295.8 315 53.0
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 5.2e-78 295.4 316 49.7
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 5.2e-78 295.4 316 49.7
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 5.2e-78 295.4 316 49.7
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 6.7e-78 295.0 321 51.7
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 6.7e-78 295.0 323 53.3
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.8e-78 294.7 323 49.2
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-77 294.3 323 49.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-77 294.3 323 49.5
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.1e-77 294.3 318 51.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.5e-77 293.9 318 51.6
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.0e-77 293.5 316 49.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.0e-77 293.5 328 50.9
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.6e-77 293.1 316 51.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 4.4e-77 292.4 322 50.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.4e-77 292.4 318 49.1
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.7e-77 292.0 316 48.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.7e-77 291.2 316 49.7
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 9.7e-77 291.2 325 50.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.3e-76 290.8 290 54.5
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-76 290.4 324 50.6
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-76 290.0 324 50.0
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-76 289.7 324 50.6
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.8e-76 289.7 313 51.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.7e-76 289.3 323 49.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.7e-76 289.3 299 52.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.7e-76 289.3 299 49.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.8e-76 288.9 324 49.7
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.8e-76 288.9 324 49.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 4.8e-76 288.9 321 50.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 6.3e-76 288.5 324 48.8
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 6.3e-76 288.5 324 48.8
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 6.3e-76 288.5 324 48.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 6.3e-76 288.5 323 49.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 6.3e-76 288.5 280 53.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 8.2e-76 288.1 323 48.9
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 8.2e-76 288.1 325 48.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.2e-76 288.1 350 50.3
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.4e-75 287.3 316 48.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.4e-75 286.6 320 49.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 5.3e-75 285.4 290 53.4
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 5.3e-75 285.4 318 50.3
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.0e-75 285.0 337 49.6
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 7.0e-75 285.0 317 51.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.6e-74 283.9 328 48.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.6e-74 283.9 312 48.4
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 3.5e-74 282.7 317 49.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 7.7e-74 281.6 317 48.9
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.9e-73 279.6 271 53.1
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.8e-73 279.3 319 49.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.0e-73 278.9 314 47.1
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 6.5e-73 278.5 325 48.3
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.5e-72 276.6 319 48.0
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.5e-72 275.4 316 48.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.6e-71 273.9 317 47.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.6e-71 273.9 323 48.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.6e-71 273.9 316 47.5
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.1e-71 271.9 318 46.9
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 6.1e-71 271.9 323 47.4
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.0e-71 271.6 320 49.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.0e-70 271.2 320 48.4
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.4e-70 270.8 317 45.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.3e-70 270.0 324 46.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.0e-70 269.2 320 46.2
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 5.2e-70 268.9 322 45.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.7e-70 268.5 321 46.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.2e-69 267.7 317 46.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.5e-69 267.3 300 50.0
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.6e-69 266.5 320 47.5
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 3.3e-69 266.2 381 43.6
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.4e-69 265.8 292 48.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 5.7e-69 265.4 319 46.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.7e-68 263.8 315 48.6
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.8e-68 263.1 318 45.3
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 4.8e-68 262.3 320 48.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.8e-67 260.4 292 50.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.4e-67 260.0 318 48.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.4e-67 260.0 321 48.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 7.0e-67 258.5 318 43.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.7e-66 256.5 317 45.7
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 5.9e-66 255.4 315 46.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.0e-65 254.6 290 50.3
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 8.5e-65 251.5 314 44.9
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.9e-64 250.4 258 50.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-63 247.7 258 53.5
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.2e-63 247.7 318 45.9
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.7e-63 246.5 323 44.9
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.2e-62 242.3 257 50.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-61 241.1 257 50.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.4e-61 239.6 326 44.8
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 9.8e-61 238.0 286 48.3
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.7e-60 237.3 319 45.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.1e-59 234.6 314 44.3
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.4e-59 232.3 314 43.6
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.0e-57 225.7 315 44.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.2e-56 222.6 423 35.5
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.1e-55 218.8 343 41.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.6e-47 193.0 214 48.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.6e-47 193.0 223 47.1
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.3e-36 157.9 255 37.6
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.5e-34 149.8 169 47.3
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 2.5e-32 143.7 163 44.8
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.0e-30 136.3 168 48.2
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.7e-28 129.8 320 31.2
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 8.3e-28 128.6 321 27.4
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.5e-26 123.2 193 38.9
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.6e-26 122.9 311 27.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.8e-22 110.9 121 47.9
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.2e-22 109.4 121 47.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.5e-21 107.8 315 30.2
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.8e-20 103.2 114 49.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 9.6e-16 88.6 118 44.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.1e-15 87.4 76 61.8
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 8.1e-15 85.5 108 48.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 8.1e-15 85.5 75 61.3
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.1e-14 83.6 87 50.6
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.0e-14 83.2 98 49.0
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.0e-14 83.2 98 49.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.4e-13 80.1 75 58.7
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-12 78.2 107 45.8
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.0e-09 68.6 121 37.2
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.0e-09 68.6 83 41.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.0e-09 68.6 106 34.9


User provided reference genes

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