Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 0.0e+00 1368.2 704 100.0
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.2e-244 850.1 817 61.9
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 7.7e-244 847.4 727 66.6
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.5e-243 844.3 727 66.3
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 2.2e-153 547.0 617 55.9
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.2e-64 250.4 696 33.5
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.4e-59 235.3 682 31.5
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.0e-59 232.6 617 36.1
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 3.4e-58 230.7 605 34.2
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 2.2e-57 228.0 516 36.8
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.9e-57 227.6 703 32.6
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.5e-55 220.7 683 31.8
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 7.9e-55 219.5 482 37.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.9e-53 214.9 416 39.2
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.5e-50 205.3 559 32.4
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.0e-50 204.9 427 39.3
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 3.4e-50 204.1 569 34.8
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 3.4e-50 204.1 608 32.6
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 5.9e-50 203.4 691 31.1
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.9e-50 203.4 603 32.3
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.7e-49 201.8 574 34.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 6.5e-49 199.9 542 32.8
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.4e-48 198.7 558 32.6
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.5e-48 198.0 558 32.6
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.5e-48 198.0 592 31.1
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 5.5e-48 196.8 484 34.9
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.6e-47 193.7 639 29.4
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.3e-46 191.4 545 31.4
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.0e-46 191.0 694 31.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 5.1e-46 190.3 416 35.3
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.7e-45 186.8 656 30.0
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.3e-44 185.7 638 29.8
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.7e-44 185.3 511 33.1
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-43 182.6 520 31.5
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.2e-42 179.1 550 32.4
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.2e-42 179.1 512 32.4
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.2e-42 179.1 461 34.5
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 4.5e-42 177.2 416 35.6
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.0e-41 176.0 381 37.5
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.3e-41 175.6 648 29.6
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 2.2e-41 174.9 416 36.1
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-40 172.6 334 37.1
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.2e-40 171.0 303 41.6
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 9.4e-40 169.5 418 34.0
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.2e-39 169.1 775 28.0
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 7.9e-39 166.4 660 28.3
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 3.0e-38 164.5 596 27.2
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.0e-37 161.8 565 29.4
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.6e-37 161.4 435 32.9
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 9.7e-37 159.5 603 28.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 4.8e-36 157.1 576 30.6
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 6.3e-36 156.8 393 34.6
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.1e-35 156.0 363 36.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 4.1e-35 154.1 588 28.7
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.5e-34 152.1 457 30.9
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 4.5e-34 150.6 446 32.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.0e-33 149.4 604 27.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.7e-33 148.7 562 30.1
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.0e-33 147.1 563 27.9
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 5.0e-33 147.1 418 32.3
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.1e-32 146.0 515 30.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.9e-32 145.2 562 29.5
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.9e-32 145.2 601 28.1
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.6e-31 141.0 546 27.7
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 4.7e-31 140.6 153 47.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.3e-30 138.3 597 29.5
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 8.8e-30 136.3 444 31.1
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.1e-29 136.0 607 28.8
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.1e-29 136.0 731 25.3
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 7.5e-29 133.3 409 29.3
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 9.7e-29 132.9 626 27.8
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 9.7e-29 132.9 464 29.3
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 6.3e-28 130.2 382 31.4
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.1e-27 129.4 429 31.0
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 7.0e-27 126.7 522 27.0
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.5e-26 124.4 674 26.7
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 3.5e-26 124.4 510 26.9
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 2.2e-25 121.7 443 28.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.5e-25 120.2 684 26.0
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 8.5e-25 119.8 408 29.2
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.5e-25 119.8 148 45.9
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 4.2e-24 117.5 601 27.5
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 3.0e-22 111.3 218 40.4
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 2.6e-21 108.2 423 28.6
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.7e-20 105.5 319 31.0
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.7e-20 105.5 608 26.8
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.2e-20 105.1 312 30.4
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.8e-20 104.8 602 26.1
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 3.7e-20 104.4 414 28.0
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 4.8e-20 104.0 548 25.9
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 2.0e-18 98.6 464 25.9
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 2.7e-18 98.2 464 25.9
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 1.7e-17 95.5 751 24.8
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.2e-17 95.1 423 25.3
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 5.0e-17 94.0 659 25.8
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 6.5e-17 93.6 489 25.2
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 6.5e-17 93.6 489 25.2
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 6.5e-17 93.6 489 25.2
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 1.5e-16 92.4 442 27.4
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.2e-16 91.3 567 25.9
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 7.2e-16 90.1 430 26.0
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 7.2e-16 90.1 392 26.5
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 9.4e-16 89.7 229 31.4
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.2e-15 89.4 333 28.8
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 1.6e-15 89.0 417 24.2
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 2.7e-15 88.2 447 26.2
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.0e-14 86.3 418 27.3
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 5.2e-14 84.0 496 24.2
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 6.8e-14 83.6 196 35.7
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 4.4e-13 80.9 419 26.5
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 2.8e-12 78.2 237 29.1
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.8e-11 75.5 384 28.1
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 3.1e-11 74.7 545 24.8
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 3.5e-10 71.2 55 61.8
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 2.9e-09 68.2 371 26.7
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 8.6e-09 66.6 418 24.4
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.5e-08 65.9 194 31.4
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 1.9e-08 65.5 642 22.3
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.9e-08 65.5 300 30.0
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 9.5e-08 63.2 197 29.9
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-07 62.8 316 26.9
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.6e-07 62.4 197 29.4
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.8e-07 61.6 242 27.7
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 4.7e-07 60.8 141 31.2
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.0e-07 60.1 210 27.1
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 8.0e-07 60.1 210 28.6
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.4e-06 59.3 248 29.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.4e-06 59.3 272 27.9
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.4e-06 59.3 190 27.4
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.0e-06 58.2 218 26.6
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 4.0e-06 57.8 218 26.6
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 4.0e-06 57.8 205 31.7
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 5.2e-06 57.4 276 27.2
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 6.8e-06 57.0 240 27.9
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 6.8e-06 57.0 193 27.5
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 8.9e-06 56.6 221 28.1


User provided reference genes

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