Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1838.2 1011 100.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1570.4 994 86.2
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1475.7 1008 81.4
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1463.4 1006 81.2
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1384.4 1003 77.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1221.1 1059 67.1
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1171.0 1042 64.6
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1170.2 1034 66.3
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1162.5 1021 65.6
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1159.1 1019 65.8
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1158.3 1054 65.6
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1149.4 1052 64.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1148.7 1031 65.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1148.3 1015 65.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1134.4 1020 63.7
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1134.0 1052 63.8
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1133.6 1023 64.9
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1126.3 1026 62.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1122.8 1030 64.2
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1113.2 1034 61.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1111.7 1054 63.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1106.3 1008 62.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1104.0 1031 62.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1102.0 1018 63.4
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1096.3 1006 64.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1022 62.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1092.0 1030 63.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1091.3 1039 61.9
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1090.5 1028 61.8
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1088.6 1022 62.3
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1060 60.9
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1085.1 977 62.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1083.2 1050 61.1
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1081.6 1020 62.9
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1081.2 1022 62.7
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1080.1 1041 61.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1077.8 1060 62.0
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 990 61.8
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1076.6 1079 60.1
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1075.5 1033 61.9
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 6.9e-312 1074.7 1021 61.2
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 3.5e-311 1071.6 1188 57.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.0e-310 1068.5 1025 61.1
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 8.4e-308 1060.4 1042 59.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.4e-307 1059.7 1036 60.8
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 7.8e-306 1053.9 1025 62.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.7e-305 1052.7 1057 60.4
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.1e-305 1051.2 1016 61.5
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 3.3e-304 1048.5 1049 59.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 4.3e-304 1048.1 1010 60.6
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 5.6e-304 1047.7 983 61.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.6e-303 1045.0 1055 58.8
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 2.6e-301 1038.9 1011 59.8
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.3e-300 1036.6 987 61.0
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.9e-300 1035.4 1018 59.2
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.4e-299 1033.1 1052 59.4
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.9e-299 1032.7 1023 59.3
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 7.1e-299 1030.8 1001 60.4
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1071 56.9
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1024 59.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.1e-298 1029.2 915 62.7
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.7e-297 1026.2 1052 59.2
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.9e-297 1025.0 1015 58.6
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.5e-296 1023.1 1027 58.9
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.5e-296 1022.3 1032 60.0
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.5e-296 1022.3 1026 60.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 8.1e-295 1017.3 1025 58.8
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.8e-294 1016.1 1015 58.2
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 9.0e-294 1013.8 1030 57.7
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.2e-292 1009.2 854 66.2
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.9e-292 1008.1 1060 58.3
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.2e-291 1005.0 1033 55.6
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 7.1e-291 1004.2 1022 56.3
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.7e-289 999.6 1010 59.3
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 7.6e-285 984.2 1030 56.3
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.7e-284 983.0 1019 59.4
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 4.9e-284 981.5 1023 58.1
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.1e-283 980.3 1001 58.5
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.2e-283 978.8 1010 58.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 5.5e-283 978.0 908 61.3
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 9.3e-283 977.2 860 63.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.3e-280 968.8 1037 56.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.5e-277 959.9 1001 57.8
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.5e-274 948.7 1014 55.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-273 947.2 999 58.6
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.3e-270 934.9 1017 55.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-268 929.9 995 55.5
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 7.2e-267 924.5 1030 54.4
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.3e-265 920.2 1002 56.4
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.8e-263 912.5 883 60.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 5.3e-262 908.3 1037 53.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.7e-260 903.3 892 58.7
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.8e-254 883.2 845 60.6
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.5e-248 863.6 1032 52.8
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 3.3e-248 862.4 1025 52.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.1e-246 857.4 1005 54.3
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 9.7e-240 834.3 1014 50.1
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.9e-237 825.1 809 59.7
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 7.7e-237 824.7 1041 50.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.7e-226 789.6 711 65.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.9e-215 753.1 612 67.8
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 5.4e-214 748.8 580 68.8
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.0e-210 734.9 1022 46.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 8.1e-202 708.4 608 65.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 4.9e-191 672.5 981 45.4
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.3e-188 663.7 906 46.5
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 7.1e-182 642.1 1025 42.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.1e-179 634.8 1105 39.9
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.5e-171 607.1 556 61.9
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.3e-170 604.7 494 67.8
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.3e-166 588.6 874 44.6
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 6.0e-165 585.9 730 51.6
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.1e-158 565.1 570 58.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.6e-152 543.9 914 39.4
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.5e-151 538.9 626 53.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.9e-140 503.4 920 38.2
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 7.7e-128 462.6 360 70.6
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.6e-104 385.2 897 35.6
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.5e-102 375.9 357 60.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-85 322.4 390 49.5
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.7e-85 320.5 628 39.6
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.1e-76 292.7 854 32.3
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 7.3e-70 270.0 571 39.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 7.8e-64 250.0 943 28.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 5.3e-60 237.3 202 65.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.9e-54 218.8 221 59.3
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 9.9e-51 206.5 222 55.0
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.2e-49 201.4 264 50.0
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.9e-47 194.5 180 59.4
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.2e-32 146.4 156 55.8
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 4.6e-32 144.4 156 54.5
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.4e-28 132.1 202 53.5
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 9.1e-28 130.2 216 49.1
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.2e-27 129.8 132 56.8
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.6e-27 128.6 123 62.6
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.6e-24 118.2 212 43.9
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 5.3e-20 104.4 64 79.7
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.2e-19 103.2 96 54.2
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.6e-19 102.1 51 94.1
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.4e-17 93.6 91 56.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 9.4e-09 67.0 45 68.9
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 9.4e-09 67.0 45 68.9
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 9.4e-09 67.0 127 37.8
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 3.6e-08 65.1 45 66.7
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.6e-08 65.1 45 66.7
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 8.0e-08 63.9 45 64.4
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.4e-07 63.2 37 81.1


User provided reference genes

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