Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 0.0e+00 2290.0 1205 100.0
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 0.0e+00 1700.3 1197 78.0
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 0.0e+00 1694.9 1187 77.3
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 0.0e+00 1691.0 1180 78.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.5e-287 992.6 1253 53.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.8e-286 988.4 1253 53.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.8e-280 967.6 1242 52.9
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.4e-279 964.5 1236 52.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.1e-273 946.4 1271 51.2
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 2.0e-271 939.9 1226 51.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.2e-260 904.0 1264 48.7
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 5.2e-256 888.6 1243 48.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 5.4e-253 878.6 1222 48.9
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.5e-252 875.5 1222 48.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.5e-250 869.8 1224 49.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 5.6e-250 868.6 1230 48.5
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.0e-248 864.4 1224 49.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.0e-247 860.1 1245 47.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.4e-247 859.4 1232 48.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.7e-246 857.1 1231 48.7
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 5.9e-244 848.6 1181 48.3
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 7.3e-242 841.6 1232 46.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.7e-241 839.0 1224 47.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 8.0e-241 838.2 1244 46.1
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.1e-240 836.3 1244 46.7
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 6.8e-240 835.1 1169 47.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.9e-240 834.7 1135 48.1
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 2.0e-239 833.6 1219 46.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.3e-238 830.9 1230 47.6
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 3.7e-238 829.3 1214 47.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.5e-236 822.8 1186 48.1
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 5.6e-234 815.5 1238 46.2
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.8e-232 810.4 1205 45.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 2.6e-231 806.6 1225 45.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.9e-226 790.4 1180 46.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.5e-226 788.1 1263 45.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.8e-225 786.6 1196 45.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 4.7e-225 785.8 1226 44.6
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.1e-224 784.6 1202 43.7
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 3.1e-224 783.1 1225 44.1
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.2e-224 782.3 1225 44.3
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 8.4e-222 775.0 1214 44.9
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 1.9e-221 773.9 1171 44.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.2e-221 773.1 1205 45.9
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 2.1e-220 770.4 1257 43.1
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.9e-219 766.1 1167 44.7
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 8.6e-219 765.0 1185 44.6
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.2e-217 761.1 1250 43.3
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.1e-216 758.1 1224 46.0
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.7e-214 750.7 1223 45.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 9.6e-210 734.9 1229 43.5
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.3e-209 734.6 1252 42.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 4.8e-209 732.6 1218 43.3
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.2e-206 723.8 1226 42.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 9.3e-205 718.4 983 48.1
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.5e-204 716.5 1144 45.5
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.7e-203 714.1 1220 42.5
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.9e-200 702.2 1191 42.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.3e-198 698.0 1249 42.6
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.2e-198 697.2 1275 39.5
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.2e-197 693.3 1217 40.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.6e-193 681.0 1236 42.6
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 8.4e-190 668.7 1197 40.7
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.7e-187 658.7 1196 41.8
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.1e-186 658.3 1242 41.1
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 2.1e-185 654.1 1152 42.9
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 8.2e-185 652.1 1198 42.0
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 5.9e-183 646.0 1231 40.7
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 7.6e-183 645.6 1212 39.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.9e-181 641.0 1216 42.1
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-179 634.8 1250 40.6
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 2.3e-179 634.0 1174 41.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.5e-175 621.3 1223 39.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 5.7e-170 602.8 1131 42.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.7e-169 600.1 1209 37.9
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 3.2e-165 587.0 1220 39.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.6e-164 583.6 1126 40.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.8e-161 573.9 1210 38.0
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 6.3e-161 572.8 1379 36.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.1e-160 570.1 1179 37.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.6e-159 568.2 1176 39.6
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.6e-159 568.2 1127 40.3
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 5.0e-158 563.1 1200 39.0
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 8.5e-158 562.4 1175 38.6
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 8.5e-158 562.4 1129 39.9
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 8.8e-155 552.4 1206 39.1
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.6e-154 550.8 1092 38.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 7.5e-154 549.3 1206 39.6
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 6.3e-153 546.2 1158 38.2
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 6.3e-153 546.2 1158 38.2
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 8.2e-153 545.8 1119 39.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.1e-152 545.4 1119 39.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.3e-150 538.5 1116 39.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.9e-150 537.3 1208 37.8
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 5.7e-146 523.1 1213 36.4
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 6.5e-142 509.6 1006 39.3
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 8.5e-142 509.2 1135 36.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.5e-133 481.9 1163 35.3
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-128 465.3 602 49.5
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 9.2e-128 462.6 579 54.1
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.7e-127 461.1 876 40.1
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 1.3e-113 415.6 587 52.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 7.1e-112 409.8 801 38.8
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.8e-107 395.2 983 34.3
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.4e-104 385.6 671 43.4
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.9e-99 366.7 1198 32.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.2e-92 343.6 493 45.0
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.5e-90 339.0 467 44.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.0e-90 338.6 527 45.0
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.4e-90 337.8 572 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.3e-89 335.9 556 43.5
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-87 328.6 494 45.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.0e-86 324.7 570 40.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-83 315.1 320 55.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 9.3e-72 276.6 414 47.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-70 272.3 291 53.3
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 3.3e-61 241.5 617 34.2
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.2e-60 238.8 494 37.7
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 3.9e-54 218.0 500 36.2
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-47 196.4 532 32.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.4e-46 193.0 525 32.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.6e-42 178.7 152 57.9
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.0e-41 176.8 873 27.0
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 5.0e-41 174.5 504 34.3
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.1e-40 173.3 232 47.8
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.5e-37 162.9 740 27.6
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.0e-34 152.5 354 34.2
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.5e-34 151.4 491 30.8
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.2e-32 144.1 228 54.4
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.7e-31 142.1 245 40.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 3.6e-31 141.7 404 34.4
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 4.0e-30 138.3 600 28.8
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.6e-29 135.6 448 31.5
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.8e-25 121.7 226 39.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 4.9e-20 104.8 234 45.7
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.0e-17 97.1 526 27.9
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.8e-15 89.0 128 40.6
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 5.8e-13 81.3 640 24.2
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.8e-13 81.3 69 55.1
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-12 79.7 119 58.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 7.8e-10 70.9 80 51.2
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.2e-07 63.5 119 40.3


User provided reference genes

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