Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 4.1e-159 564.7 291 100.0
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.8e-146 522.7 290 94.1
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 9.9e-145 516.9 290 93.1
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.1e-143 513.5 291 91.8
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.9e-143 512.7 290 92.8
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.3e-131 473.4 291 82.1
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.1e-127 460.3 292 79.1
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.1e-127 460.3 292 79.1
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.9e-127 459.5 292 79.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 9.3e-127 457.2 291 81.1
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.7e-126 455.7 292 79.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 3.5e-126 455.3 289 80.3
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.0e-125 452.2 289 77.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.9e-124 449.5 291 79.4
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.5e-124 449.1 291 79.0
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 7.4e-124 447.6 291 79.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.8e-123 445.7 292 79.1
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 3.7e-123 445.3 291 78.0
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 8.2e-123 444.1 294 76.9
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-122 443.7 293 77.1
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-122 443.7 293 77.1
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.8e-122 443.0 292 79.1
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.8e-122 443.0 294 77.2
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 3.1e-122 442.2 290 78.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 3.1e-122 442.2 288 78.5
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.0e-122 441.8 292 77.4
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 4.0e-122 441.8 292 76.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 4.0e-122 441.8 291 77.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.3e-122 441.4 291 78.0
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.3e-122 441.4 291 78.7
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 6.9e-122 441.0 293 76.5
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 6.9e-122 441.0 291 78.4
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 9.0e-122 440.7 294 77.6
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.6e-121 439.1 289 77.9
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.6e-121 439.1 287 76.7
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.4e-121 438.7 327 70.9
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.8e-121 438.0 291 77.7
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.0e-120 437.2 292 77.1
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 6.5e-120 434.5 321 71.0
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.4e-119 433.3 293 77.1
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 4.2e-119 431.8 291 76.6
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.1e-119 431.0 291 76.6
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 9.3e-119 430.6 291 76.3
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.3e-117 426.0 292 74.7
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.9e-117 425.2 317 71.3
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.3e-116 422.2 293 74.1
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.7e-116 421.4 292 74.0
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.3e-115 420.2 294 73.8
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.6e-115 419.9 293 73.0
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.2e-115 419.5 291 72.9
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.8e-115 419.1 292 74.0
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.2e-115 417.5 292 73.6
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.8e-114 416.4 293 73.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.8e-114 416.4 286 77.3
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.2e-113 413.7 292 72.6
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.2e-113 413.7 290 73.1
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.6e-113 412.5 294 73.5
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.4e-113 412.1 292 72.6
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.7e-113 411.0 292 73.3
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 7.7e-113 411.0 289 72.3
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.3e-112 410.2 293 72.0
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 4.2e-111 405.2 292 71.9
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.6e-110 403.3 292 71.6
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.6e-110 402.1 295 71.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.8e-109 399.8 292 70.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.8e-109 399.8 290 71.4
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.3e-109 399.4 304 68.8
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.3e-109 399.4 304 68.8
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.3e-109 399.4 320 66.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.0e-109 399.1 289 73.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 6.7e-109 397.9 304 68.8
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.7e-109 397.9 290 70.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 8.8e-109 397.5 289 70.9
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 8.8e-109 397.5 295 68.5
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.5e-108 396.0 292 68.5
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.3e-108 395.6 289 70.6
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 3.3e-108 395.6 292 68.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.3e-108 395.2 286 71.0
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 2.8e-107 392.5 292 70.2
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.3e-107 391.3 292 70.9
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.1e-106 390.6 281 71.5
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.8e-106 389.8 292 69.5
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.8e-106 389.8 289 69.2
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.4e-106 389.4 290 69.7
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 3.1e-106 389.0 292 67.1
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.3e-106 388.3 291 68.7
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-105 387.1 304 67.4
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.5e-105 385.2 319 64.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 5.9e-105 384.8 293 68.3
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-104 382.9 293 69.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.2e-104 382.9 289 68.9
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.5e-103 378.3 291 68.7
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 9.4e-103 377.5 292 66.1
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.7e-102 375.9 286 69.2
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.7e-102 375.9 295 64.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 7.9e-102 374.4 291 66.7
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.0e-101 374.0 274 72.6
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.3e-101 372.9 287 69.0
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.3e-101 372.9 352 58.0
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 6.7e-101 371.3 295 65.8
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.1e-100 370.5 288 66.3
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-100 370.5 334 61.7
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.3e-100 369.0 269 70.6
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 5.7e-100 368.2 235 77.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.7e-99 365.5 306 62.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 3.5e-97 359.0 295 61.7
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.0e-96 355.1 235 76.6
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.7e-94 349.4 292 62.0
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.7e-94 349.4 291 62.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 3.6e-94 349.0 286 64.7
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.0e-93 347.4 236 71.2
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.5e-89 332.0 293 61.4
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 4.5e-89 332.0 372 54.3
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.9e-88 329.3 294 60.5
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.1e-87 327.4 236 68.6
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.1e-86 323.2 313 60.1
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-84 317.4 249 63.9
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.8e-83 312.0 292 60.3
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 6.3e-83 311.6 194 79.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.7e-81 306.2 205 78.0
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.9e-81 305.1 292 59.2
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.2e-80 303.1 194 78.4
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.0e-80 302.0 289 60.2
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.1e-78 296.6 289 54.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.4e-77 293.9 304 51.0
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.0e-77 292.4 292 57.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 4.0e-77 292.4 278 61.2
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.8e-75 285.4 217 71.4
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.1e-74 284.3 206 74.3
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.1e-74 282.7 273 54.2
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.6e-73 280.4 207 69.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 2.0e-73 280.0 300 54.0
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 4.5e-73 278.9 275 56.0
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.9e-72 276.2 205 67.3
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 2.3e-69 266.5 363 45.5
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.6e-68 263.1 289 50.9
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.2e-67 260.0 285 53.3
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.1e-66 257.7 326 48.2
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.2e-62 244.2 219 54.8
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.8e-61 238.4 218 58.7
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.2e-54 217.6 314 39.8
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 6.8e-53 211.8 330 40.9
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 2.2e-51 206.8 179 63.1
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 6.2e-46 188.7 122 76.2
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.1e-37 161.4 331 34.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 3.9e-32 142.9 102 70.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 6.2e-30 135.6 88 73.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.4e-29 134.4 310 32.9
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 6.0e-25 119.0 76 69.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 2.1e-22 110.5 225 39.1
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.1e-21 108.2 82 69.5
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.0e-21 106.3 109 56.0
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-20 104.8 261 36.4
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.5e-17 93.2 327 28.1
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 6.7e-16 89.0 58 70.7
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.6e-15 85.9 140 40.7
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.7e-14 83.2 56 76.8
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 5.1e-08 62.8 102 40.2
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.8e-06 56.2 54 51.9
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.8e-06 56.2 54 51.9


User provided reference genes

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