Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.2e-99 364.4 184 100.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.9e-75 283.9 187 80.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.9e-72 276.2 188 78.2
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-69 266.9 183 78.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.1e-45 187.2 175 60.6
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.1e-44 183.0 207 52.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.8e-44 182.6 206 54.4
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 4.8e-44 181.8 206 54.9
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.2e-44 181.4 206 53.9
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-43 180.6 192 52.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.4e-43 180.3 208 53.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-43 180.3 183 55.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.1e-43 179.1 189 53.4
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 6.9e-43 177.9 173 56.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.0e-43 177.6 203 53.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-42 177.2 203 53.7
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.5e-42 176.8 203 51.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.6e-42 176.0 190 52.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 5.8e-42 174.9 198 52.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.2e-41 172.9 206 51.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.9e-41 171.8 189 53.4
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.1e-40 170.6 205 50.7
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-40 170.6 201 53.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-40 170.2 203 52.7
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.9e-40 169.9 203 52.7
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.5e-40 169.5 216 50.5
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.2e-40 169.1 215 48.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.2e-40 168.7 207 52.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.3e-40 167.5 216 49.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.2e-39 167.2 203 49.8
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.6e-39 166.8 202 52.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.1e-39 166.4 205 52.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.5e-39 165.6 216 49.1
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.6e-39 165.2 196 51.0
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.6e-39 165.2 196 50.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 6.0e-39 164.9 194 50.5
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.0e-39 164.9 201 51.7
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 7.9e-39 164.5 186 51.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-38 163.7 203 51.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.8e-38 163.3 212 48.6
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-38 163.3 212 48.6
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-38 163.3 212 48.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-38 163.3 207 51.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.8e-38 163.3 207 51.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-38 163.3 203 48.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.3e-38 162.9 176 54.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.7e-38 161.4 175 54.3
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 8.7e-38 161.0 173 52.0
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.5e-37 159.5 187 51.3
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 9.6e-37 157.5 183 49.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.3e-36 157.1 188 49.5
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-36 157.1 211 47.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.6e-36 156.8 196 50.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.6e-36 156.8 202 49.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 3.7e-36 155.6 219 46.1
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.8e-36 155.2 199 48.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.2e-36 154.5 163 57.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.2e-36 154.5 192 48.4
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.1e-35 152.5 209 47.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.1e-35 152.5 191 50.3
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 4.1e-35 152.1 195 47.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 6.9e-35 151.4 193 49.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.0e-35 151.0 175 50.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.5e-34 150.2 196 47.4
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.5e-34 150.2 209 48.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.0e-34 149.8 202 47.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.0e-34 149.8 183 48.1
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.6e-34 149.4 186 48.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.4e-34 149.1 205 45.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.4e-34 149.1 188 48.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.8e-34 148.3 163 55.2
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 5.8e-34 148.3 214 46.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.0e-33 147.5 192 52.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.7e-33 146.7 213 45.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.9e-33 146.0 215 46.5
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.9e-33 146.0 179 50.8
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.9e-33 146.0 200 46.5
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.8e-33 145.6 221 45.2
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.5e-33 144.8 194 48.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 6.5e-33 144.8 169 52.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 8.4e-33 144.4 201 44.8
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.4e-32 143.7 172 50.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.5e-32 142.9 177 49.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.2e-32 142.5 210 44.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 4.2e-32 142.1 238 41.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.2e-32 142.1 185 47.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 5.5e-32 141.7 215 44.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.2e-32 141.4 197 45.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.3e-32 141.0 205 46.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-31 139.4 165 50.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 4.6e-31 138.7 163 51.5
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 6.1e-31 138.3 183 45.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 7.9e-31 137.9 163 50.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.0e-30 137.5 133 58.6
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.0e-30 136.0 168 47.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 3.9e-30 135.6 206 44.7
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.9e-30 135.6 211 42.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 5.1e-30 135.2 163 49.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.1e-30 135.2 163 49.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.7e-30 134.8 183 49.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 8.7e-30 134.4 200 45.5
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-29 134.0 211 45.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-29 133.7 181 45.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-29 133.3 167 47.9
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-29 133.3 167 47.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.9e-29 133.3 180 45.6
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.3e-29 132.1 165 47.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.7e-29 131.7 203 42.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.7e-29 131.7 187 49.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.7e-29 131.7 187 49.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.4e-29 131.3 166 47.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 7.4e-29 131.3 189 45.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.4e-29 131.3 176 47.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 9.7e-29 131.0 165 47.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-28 130.6 175 46.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-28 130.6 187 43.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-28 130.2 167 49.1
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.6e-28 130.2 203 44.8
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-28 129.4 165 47.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.7e-28 129.0 191 45.0
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 4.8e-28 128.6 187 43.3
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 8.2e-28 127.9 161 48.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.1e-27 127.5 156 49.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.1e-27 127.5 118 60.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-27 127.1 144 49.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.4e-27 126.3 173 48.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.1e-27 125.6 193 42.5
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.3e-27 125.2 186 43.0
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.3e-27 125.2 168 45.8
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 5.3e-27 125.2 192 44.3
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.9e-27 124.8 169 46.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 6.9e-27 124.8 187 41.7
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.5e-26 123.6 199 43.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.0e-26 123.2 183 42.6
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.5e-26 122.1 185 42.2
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.5e-26 122.1 167 46.1
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 5.9e-26 121.7 161 47.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.7e-26 121.3 185 42.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.2e-25 119.8 196 42.3
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 5.0e-25 118.6 227 39.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 5.0e-25 118.6 195 39.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.5e-25 118.2 185 41.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-24 117.5 162 45.7
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-24 116.7 147 50.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-24 116.7 210 37.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.5e-24 116.3 191 41.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.2e-24 115.9 203 40.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.2e-24 114.8 152 47.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.4e-24 114.4 195 39.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-23 113.6 194 39.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-23 113.6 194 39.2
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-23 113.6 193 45.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-23 113.2 195 39.0
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.1e-23 113.2 168 44.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.6e-23 112.5 147 49.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 7.9e-23 111.3 147 48.3
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 6.7e-22 108.2 111 57.7
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 9.7e-21 104.4 187 41.2
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.4e-19 100.5 118 51.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.7e-17 93.6 115 47.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.2e-17 93.2 169 42.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.9e-17 92.8 135 40.7
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.5e-17 91.7 174 40.2
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.5e-16 88.6 106 50.9
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.2e-16 88.2 141 39.7
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 9.4e-16 87.8 176 38.1
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.6e-15 87.0 154 35.7
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.1e-15 86.7 269 31.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 6.1e-15 85.1 178 37.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.1e-15 85.1 142 39.4
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.9e-14 82.4 177 36.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 8.8e-14 81.3 177 36.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.8e-14 81.3 154 33.1
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-13 80.5 179 35.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-13 79.3 179 35.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 7.4e-13 78.2 180 38.3
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.7e-13 77.8 165 38.8
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.2e-12 76.6 112 46.4
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.2e-12 74.7 157 37.6
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.6e-10 69.7 102 45.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.8e-09 65.9 81 50.6
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.5e-09 64.7 64 51.6
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.5e-08 62.0 142 35.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.7e-07 59.7 67 52.2
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 2.3e-06 56.6 199 27.1


User provided reference genes

Program Settings