Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 0.0e+00 2671.7 1324 100.0
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 0.0e+00 1852.4 1381 69.7
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 0.0e+00 1770.0 1329 70.4
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 0.0e+00 1734.9 1402 66.3
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 3.0e-305 1052.4 1413 44.7
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 1.4e-302 1043.5 1423 43.6
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.6e-301 1039.3 1403 43.2
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 7.1e-299 1031.2 1390 44.3
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 4.0e-294 1015.4 1394 43.9
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 2.0e-293 1013.1 1395 43.8
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 5.6e-288 995.0 1392 42.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 3.7e-287 992.3 1392 42.3
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 6.5e-284 981.5 1401 43.4
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 2.5e-283 979.5 1473 42.2
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 2.3e-281 973.0 1395 40.9
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 6.7e-281 971.5 1400 42.6
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.3e-279 967.2 1399 42.4
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 1.4e-278 963.8 1415 41.8
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-264 916.0 1428 40.9
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 3.1e-262 909.4 1237 43.7
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.5e-259 899.8 1377 39.7
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.0e-253 880.2 1422 39.2
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 5.9e-253 878.6 1411 40.0
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 2.9e-252 876.3 1424 38.3
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 1.2e-250 870.9 1396 39.3
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 3.7e-247 859.4 1395 38.6
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 6.3e-247 858.6 1355 39.6
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.9e-243 847.0 1398 39.3
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 8.0e-242 841.6 1383 38.1
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.2e-239 833.6 1323 39.9
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.4e-233 814.3 1392 38.0
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 3.0e-233 813.1 1391 38.7
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 2.2e-231 807.0 1376 38.1
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 2.8e-231 806.6 1393 38.7
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.3e-228 797.7 1388 38.1
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 8.3e-223 778.5 1415 37.2
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.0e-220 771.5 1391 37.2
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 2.3e-217 760.4 1400 35.0
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 6.4e-215 752.3 1381 36.4
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 3.2e-214 750.0 1229 38.6
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 4.1e-214 749.6 1377 36.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.7e-212 744.2 1398 35.8
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 3.3e-211 740.0 1422 36.3
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 9.5e-211 738.4 1373 35.3
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.6e-210 736.5 1400 35.8
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 6.2e-210 735.7 1348 36.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 6.2e-210 735.7 1404 36.5
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.6e-208 730.3 1404 35.0
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 4.4e-208 729.6 1385 34.9
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 8.9e-201 705.3 1375 35.4
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.5e-200 704.5 1389 35.1
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 3.0e-196 690.3 1373 34.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 5.8e-192 676.0 1358 34.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.3e-191 674.9 1371 34.7
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 5.4e-190 669.5 1355 34.6
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 3.0e-188 663.7 1410 33.9
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.1e-187 661.8 1354 35.2
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 5.6e-187 659.4 1365 34.2
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 9.6e-187 658.7 1380 34.3
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.3e-186 658.3 1361 34.2
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 2.1e-186 657.5 1361 33.9
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 3.1e-185 653.7 1369 34.1
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 3.1e-185 653.7 1366 35.0
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 1.7e-183 647.9 1360 34.0
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 9.3e-182 642.1 1366 33.1
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 2.1e-181 641.0 1374 33.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.0e-180 638.6 1162 34.5
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 3.0e-180 637.1 1374 33.2
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 9.9e-176 622.1 1409 32.4
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.9e-175 619.8 1189 35.7
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.0e-172 612.1 1383 32.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 5.6e-171 606.3 1149 34.6
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.6e-170 604.7 1496 32.6
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.5e-166 589.7 1291 33.2
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.1e-161 575.5 1207 34.4
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 2.2e-159 567.8 973 37.4
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.9e-155 554.7 1086 34.5
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 8.2e-154 549.3 1389 31.3
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.1e-147 528.9 1519 28.8
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 5.9e-144 516.5 1014 35.1
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 2.8e-130 471.1 1364 29.5
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.1e-121 440.7 839 37.3
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 4.1e-121 440.7 1264 28.5
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.2e-115 422.5 929 30.9
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.7e-103 382.1 364 53.6
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 8.6e-103 379.8 425 49.9
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 2.5e-102 378.3 413 46.5
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 7.3e-102 376.7 1389 26.6
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 2.1e-96 358.6 410 49.0
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.7e-95 355.5 444 43.7
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 6.6e-95 353.6 814 31.3
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.1e-84 319.7 364 48.6
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-81 308.9 280 54.3
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.0e-79 303.1 379 45.4
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 1.7e-79 302.4 631 32.6
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 7.6e-75 287.0 853 29.4
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.1e-72 278.9 364 43.1
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.3e-70 271.2 252 54.0
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.1e-62 246.5 480 34.4
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 2.6e-59 235.3 376 36.4
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 6.4e-58 230.7 323 41.8
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.3e-57 226.9 216 53.7
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 5.1e-55 221.1 600 32.0
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.8e-50 204.9 669 26.0
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 9.3e-49 200.3 756 26.1
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 6.0e-48 197.6 1300 22.5
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.3e-46 191.4 273 42.9
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.4e-41 176.4 568 28.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.5e-41 175.6 508 27.6
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 3.3e-38 165.2 114 63.2
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.7e-37 162.9 416 30.8
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 7.7e-35 154.1 272 36.4
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 4.7e-32 144.8 199 39.2
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 2.5e-25 122.5 607 24.1
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.3e-23 115.9 217 35.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 3.9e-23 115.2 171 38.0
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.5e-22 113.2 213 36.6
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.8e-20 106.3 183 36.6
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 7.7e-19 100.9 270 29.6
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.7e-18 99.8 73 64.4
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 9.4e-17 94.0 268 30.6
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 2.0e-14 86.3 51 72.5
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.4e-14 85.5 290 26.9
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 4.5e-11 75.1 224 30.4
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 1.2e-06 60.5 78 41.0


User provided reference genes

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