Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.3e-149 534.3 614 100.0
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 4.9e-85 319.7 609 84.9
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.0e-82 310.5 617 83.5
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 4.0e-79 300.1 611 83.6
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 3.2e-44 184.1 240 72.9
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 3.9e-42 177.2 243 70.4
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 5.7e-41 173.3 240 67.5
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.7e-40 170.6 240 67.1
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.4e-39 168.7 240 66.7
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 6.9e-39 166.4 230 67.4
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.9e-39 166.4 243 67.9
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.5e-38 165.2 241 67.2
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.7e-37 161.8 233 67.8
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 5.0e-37 160.2 230 69.6
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 6.5e-37 159.8 230 67.8
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 8.5e-37 159.5 625 71.2
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.2e-36 157.1 230 69.1
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 7.2e-36 156.4 617 71.6
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.6e-35 155.2 204 71.6
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.6e-35 153.7 203 74.4
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.0e-34 152.5 197 75.6
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.4e-34 152.1 231 67.5
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.4e-34 152.1 230 68.3
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.8e-34 151.8 240 65.4
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.0e-34 151.0 230 68.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 3.0e-34 151.0 231 39.4
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 3.9e-34 150.6 233 64.8
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 3.9e-34 150.6 204 70.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 6.7e-34 149.8 245 62.9
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 8.8e-34 149.4 231 64.9
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 8.8e-34 149.4 231 64.9
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 2.0e-33 148.3 230 66.5
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 2.5e-33 147.9 233 64.4
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 5.7e-33 146.7 231 65.4
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 7.4e-33 146.4 245 63.3
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-32 145.2 209 71.8
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.7e-32 145.2 230 64.8
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 2.2e-32 144.8 194 72.2
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 2.8e-32 144.4 227 67.4
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.8e-32 144.4 201 73.1
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.7e-32 144.1 226 65.5
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.8e-32 143.7 239 65.3
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 4.8e-32 143.7 243 62.1
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-32 143.3 203 71.9
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-32 143.3 203 71.9
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 8.2e-32 142.9 239 64.9
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 8.2e-32 142.9 207 71.0
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.4e-31 142.1 230 64.3
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.8e-31 141.7 245 62.0
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 1.8e-31 141.7 227 61.7
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.3e-31 140.2 226 64.6
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.9e-31 139.8 226 64.2
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.5e-30 138.7 226 63.7
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 1.5e-30 138.7 204 69.6
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-30 137.9 226 63.7
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 3.4e-30 137.5 230 65.2
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 4.5e-30 137.1 224 62.5
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 4.5e-30 137.1 116 60.3
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 5.9e-30 136.7 186 75.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 5.9e-30 136.7 230 64.8
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.0e-29 136.0 235 59.6
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.3e-29 135.6 229 66.4
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.7e-29 135.2 243 64.2
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.2e-29 134.8 203 38.4
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.8e-29 134.0 244 60.2
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 3.8e-29 134.0 226 63.7
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 5.0e-29 133.7 245 60.4
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 8.5e-29 132.9 186 69.4
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.1e-28 132.5 244 45.1
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.1e-28 132.5 241 61.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-28 131.7 227 63.9
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 2.5e-28 131.3 230 61.7
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 3.2e-28 131.0 234 61.1
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 9.4e-28 129.4 239 63.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.6e-27 128.6 205 65.9
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.6e-27 128.6 116 58.6
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 2.7e-27 127.9 245 62.4
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 4.7e-27 127.1 185 47.6
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 4.7e-27 127.1 233 63.9
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 6.1e-27 126.7 204 52.5
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.0e-26 124.4 203 35.0
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 3.0e-26 124.4 198 69.2
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 3.9e-26 124.0 189 67.2
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 3.9e-26 124.0 189 67.2
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 3.9e-26 124.0 196 69.4
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.1e-26 123.6 194 69.1
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 5.1e-26 123.6 178 75.3
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 8.8e-26 122.9 186 71.0
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 8.8e-26 122.9 197 70.1
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.1e-25 122.5 189 66.7
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.5e-25 122.1 189 66.7
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.5e-25 122.1 189 66.7
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.5e-25 122.1 92 64.1
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 2.0e-25 121.7 203 61.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.3e-25 120.9 199 35.2
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.3e-25 120.9 194 68.6
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.3e-25 120.9 194 68.6
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 4.4e-25 120.6 188 42.0
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.4e-25 120.6 231 57.1
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 5.7e-25 120.2 226 57.5
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 5.7e-25 120.2 186 69.4
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 1.3e-24 119.0 193 67.9
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.3e-24 119.0 204 65.7
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.7e-24 118.6 186 69.9
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.7e-24 118.6 199 60.8
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.7e-24 118.6 200 41.5
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.7e-24 118.6 231 60.2
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.2e-24 118.2 241 59.3
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.2e-24 118.2 227 60.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.8e-24 117.9 201 35.3
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 6.3e-24 116.7 186 69.4
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 6.3e-24 116.7 186 69.4
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 6.3e-24 116.7 188 64.9
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 8.2e-24 116.3 117 52.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 8.2e-24 116.3 206 66.0
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 8.2e-24 116.3 97 62.9
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.8e-23 115.2 79 70.9
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 3.1e-23 114.4 198 66.7
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 3.1e-23 114.4 198 66.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 7.0e-23 113.2 226 56.2
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 7.0e-23 113.2 204 64.7
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 7.0e-23 113.2 186 67.7
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 7.0e-23 113.2 202 61.9
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 7.0e-23 113.2 185 66.5
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 9.1e-23 112.8 202 62.4
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.2e-22 112.5 188 67.6
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.2e-22 112.5 203 64.0
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.2e-22 112.5 188 64.9
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 2.6e-22 111.3 188 35.1
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 3.5e-22 110.9 188 59.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 7.7e-22 109.8 203 64.0
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.0e-21 109.4 125 50.4
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.0e-21 109.4 165 71.5
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.7e-21 108.6 183 66.7
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.2e-21 108.2 166 76.5
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-21 107.8 167 76.6
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 3.8e-21 107.5 240 56.2
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 5.0e-21 107.1 91 58.2
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 6.5e-21 106.7 167 74.9
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.5e-20 105.5 227 62.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.5e-20 105.5 203 32.5
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.9e-20 105.1 186 47.3
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 4.2e-20 104.0 122 48.4
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 1.6e-19 102.1 97 54.6
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.6e-19 102.1 203 61.1
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.1e-19 101.7 202 61.4
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 4.7e-19 100.5 185 65.4
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.1e-19 100.1 186 50.0
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.0e-18 99.4 186 45.2
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.0e-18 99.4 194 63.4
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 3.0e-18 97.8 192 64.1
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.2e-18 97.1 75 57.3
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 5.2e-18 97.1 186 50.5
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 5.2e-18 97.1 79 62.0
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 6.7e-18 96.7 167 71.3
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.1e-17 95.9 179 65.9
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.5e-17 95.5 232 27.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.3e-16 92.4 169 32.0
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.2e-16 91.7 167 70.1
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.7e-16 90.9 98 49.0
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.4e-15 89.0 111 42.3
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.4e-15 89.0 203 59.6
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 2.4e-15 88.2 70 62.9
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 9.1e-15 86.3 197 57.9
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.6e-14 85.5 230 52.2
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.6e-14 85.5 203 58.6
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 2.7e-14 84.7 157 35.0
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 1.2e-11 75.9 122 36.9
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 6.1e-11 73.6 46 71.7
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 4.0e-10 70.9 92 41.3
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 1.2e-09 69.3 197 53.8
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 1.2e-09 69.3 197 53.8
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 9.8e-09 66.2 47 61.7
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 1.3e-08 65.9 176 29.5
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 2.8e-08 64.7 68 47.1
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 6.3e-08 63.5 63 49.2
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 5.4e-07 60.5 109 36.7
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 7.0e-07 60.1 44 56.8
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 7.0e-07 60.1 67 43.3
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.6e-06 58.9 41 61.0
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 3.5e-06 57.8 44 61.4
BcaC04g19515 Brassica carinata HOM05D003689 ORTHO05D003950 3.5e-06 57.8 44 50.0


User provided reference genes

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