Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2552.7 1295 100.0
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2212.6 1296 85.4
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2206.8 1299 84.7
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2206.4 1295 85.2
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2205.6 1296 85.3
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2194.9 1296 84.7
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2194.9 1294 84.9
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2191.0 1293 84.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1293 84.5
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2186.4 1295 84.3
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2184.8 1293 84.2
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2183.3 1293 84.7
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1295 84.2
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2172.9 1295 84.5
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2170.2 1295 84.3
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2167.1 1296 84.1
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2166.7 1297 84.0
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2164.0 1297 84.1
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2161.3 1307 83.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2161.0 1296 83.9
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2158.3 1295 83.4
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2152.5 1323 82.2
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2152.1 1293 83.4
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2149.8 1294 83.2
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2146.7 1296 83.5
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2146.7 1296 83.4
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2145.9 1296 82.6
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2144.4 1296 83.3
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2140.2 1295 82.5
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2139.8 1296 82.9
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2137.5 1301 82.6
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2134.4 1296 82.9
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2125.9 1296 82.6
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2124.4 1294 82.2
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2123.6 1299 82.0
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2120.1 1311 82.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2119.7 1311 82.1
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2112.8 1297 81.1
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2112.4 1298 81.4
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2112.0 1296 80.6
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2110.5 1294 82.6
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2108.2 1298 81.2
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2107.8 1298 80.8
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2107.4 1297 81.4
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2105.9 1298 81.0
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2102.4 1296 81.1
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2098.2 1299 81.0
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2097.4 1293 81.1
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2095.9 1297 81.1
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2093.2 1303 80.2
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2091.2 1298 80.6
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2091.2 1297 81.3
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2089.7 1296 80.1
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2089.7 1296 80.1
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2088.9 1296 81.6
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2082.4 1293 80.3
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2080.8 1294 80.9
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2079.7 1315 80.7
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2076.2 1296 80.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2072.4 1295 79.8
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2072.0 1298 79.9
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2062.7 1295 79.4
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2060.4 1296 80.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2060.0 1316 80.3
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2050.4 1304 78.9
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2048.9 1301 79.2
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2048.9 1297 79.7
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2045.8 1293 79.6
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2016.1 1300 77.9
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1961.4 1223 80.0
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1960.7 1424 72.1
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1923.7 1556 66.5
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1911.3 1228 77.8
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1895.6 1173 80.5
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1889.0 1300 74.6
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1886.3 1295 72.3
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1845.5 1297 70.9
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1742.6 938 93.0
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1723.4 1321 69.3
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1701.4 910 93.3
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1692.6 912 92.9
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1619.0 962 84.5
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1618.2 964 85.1
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1593.6 1069 76.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1574.7 943 82.9
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1511.5 1209 64.5
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1504.6 1326 57.2
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1502.6 1301 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1499.6 1300 58.8
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1477.2 907 79.9
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1472.2 912 80.6
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1456.0 1298 56.9
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1453.3 1179 65.0
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1380.5 844 81.2
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1380.5 910 75.6
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1349.0 1316 52.7
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1341.3 949 72.0
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1267.3 920 68.3
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1126.7 687 82.7
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 8.1e-247 858.2 803 58.7
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-242 844.3 826 56.9
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-236 823.2 486 86.0
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.3e-217 761.1 499 79.2
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 9.9e-213 745.0 461 81.8
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 2.0e-197 694.1 560 65.9
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 5.9e-181 639.4 351 92.3
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.2e-179 633.6 421 73.9
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.2e-178 631.7 351 90.9
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.2e-173 615.1 349 89.7
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.3e-172 611.7 348 89.7
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 9.4e-171 605.5 348 90.8
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.8e-166 591.3 349 88.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 2.0e-165 587.8 348 85.6
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 8.3e-159 565.8 451 64.1
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 3.7e-151 540.4 645 44.3
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 5.4e-150 536.6 334 79.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.7e-149 534.3 374 69.5
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 3.6e-146 523.9 394 72.3
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 2.7e-141 507.7 278 92.8
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.8e-137 495.0 301 79.7
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 5.6e-131 473.4 261 91.6
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 1.7e-119 435.3 278 82.4
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.4e-118 431.4 323 67.8
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 9.0e-113 412.9 409 56.0
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 3.5e-109 401.0 243 81.5
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.0e-109 400.2 348 62.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 9.9e-104 382.9 260 76.9
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 3.2e-102 377.9 266 76.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.9e-85 320.1 289 58.8
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 2.4e-73 282.0 154 91.6
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.4e-67 261.2 166 75.3
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 7.0e-65 253.8 465 32.3
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-61 243.0 134 88.1
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 3.5e-56 224.9 130 86.2
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 3.5e-56 224.9 425 36.5
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 8.5e-55 220.3 132 82.6
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.3e-50 206.5 119 79.0
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.7e-50 206.1 142 66.9
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 3.7e-50 204.9 127 78.0
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.3e-42 179.9 127 66.9
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 1.7e-39 169.5 123 73.2
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 7.2e-38 164.1 161 52.2
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 3.7e-34 151.8 123 66.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.7e-34 151.8 128 65.6
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.5e-32 145.2 98 69.4
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-31 142.5 98 68.4
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.3e-31 142.5 113 61.9
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.2e-28 131.3 95 62.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.8e-27 127.9 74 81.1
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 5.8e-27 127.9 74 79.7
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.4e-25 122.5 74 75.7
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 9.2e-25 120.6 82 69.5
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-23 116.3 130 52.3
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 1.9e-22 112.8 73 74.0
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 5.1e-15 88.2 99 51.5
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.1e-14 87.0 77 59.7
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.6e-14 84.7 54 75.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.7e-08 65.9 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.6e-08 65.1 36 83.3


User provided reference genes

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