Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 1.9e-147 525.8 257 100.0
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 3.7e-135 485.0 257 91.4
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 1.7e-132 476.1 257 89.5
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.5e-131 472.2 257 88.7
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 4.2e-131 471.5 257 89.5
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 7.7e-117 424.1 250 81.2
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 1.0e-113 413.7 255 80.0
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 6.8e-113 411.0 252 77.0
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 4.8e-111 404.8 253 77.9
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 2.0e-109 399.4 255 75.3
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.2e-108 396.0 246 78.5
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 3.8e-108 395.2 256 75.0
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 3.8e-108 395.2 256 73.4
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 3.8e-108 395.2 252 77.0
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 6.5e-108 394.4 251 76.5
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 8.5e-108 394.0 252 75.8
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 1.1e-107 393.7 252 75.0
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 2.5e-107 392.5 251 76.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 2.5e-107 392.5 253 75.9
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 1.2e-106 390.2 252 75.0
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.6e-106 388.7 252 75.4
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 3.6e-106 388.7 252 74.2
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 4.7e-106 388.3 252 75.4
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 4.7e-106 388.3 253 75.9
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 6.1e-106 387.9 255 75.7
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.0e-105 387.1 252 75.4
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 2.3e-105 386.0 254 74.4
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 3.0e-105 385.6 251 73.7
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.0e-105 385.6 252 75.0
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 6.8e-105 384.4 252 73.8
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.6e-104 382.5 246 72.4
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 2.6e-104 382.5 253 73.9
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 2.6e-104 382.5 254 73.2
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.8e-104 380.6 252 74.6
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.3e-103 380.2 252 73.0
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.7e-103 379.8 252 74.6
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 1.7e-103 379.8 252 72.2
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 2.2e-103 379.4 250 73.2
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.2e-103 379.4 252 74.6
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 2.8e-103 379.0 252 74.2
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 2.8e-103 379.0 252 72.6
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 3.7e-103 378.6 244 76.2
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 4.9e-103 378.3 251 73.3
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 4.9e-103 378.3 252 73.0
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 6.3e-103 377.9 252 73.8
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 8.3e-103 377.5 235 77.0
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.1e-102 377.1 251 74.5
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 2.4e-102 375.9 253 74.3
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.6e-101 373.2 251 71.3
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.7e-101 372.5 252 71.0
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.0e-100 370.5 248 70.6
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.3e-100 370.2 248 73.4
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.3e-100 370.2 254 72.0
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 5.0e-100 368.2 255 70.2
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 1.9e-99 366.3 248 69.0
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.9e-99 366.3 245 69.8
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.5e-99 365.9 254 68.9
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.5e-99 365.9 245 71.0
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 7.3e-99 364.4 258 71.7
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.6e-98 363.2 223 76.7
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 2.1e-98 362.8 254 70.1
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 1.0e-97 360.5 223 75.3
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.3e-97 359.4 242 68.6
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.3e-97 359.4 242 69.0
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 5.2e-97 358.2 220 75.5
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 6.8e-97 357.8 251 66.9
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 1.2e-96 357.1 217 76.5
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.5e-96 356.7 254 68.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 2.6e-96 355.9 259 69.9
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 2.6e-96 355.9 217 77.0
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.4e-96 355.5 258 70.5
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 7.5e-96 354.4 225 76.0
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 9.8e-96 354.0 217 76.5
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 6.4e-95 351.3 217 77.9
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 8.3e-95 350.9 249 67.5
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.8e-94 349.7 213 78.4
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 7.0e-94 347.8 223 74.0
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 4.6e-93 345.1 229 77.3
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.0e-92 344.0 255 67.8
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 3.0e-92 342.4 256 64.5
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 3.9e-92 342.0 236 68.2
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 6.6e-92 341.3 236 68.6
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 1.5e-91 340.1 248 66.1
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 4.3e-91 338.6 224 72.3
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 7.3e-91 337.8 213 75.6
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 9.5e-91 337.4 240 67.1
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.8e-90 335.9 252 65.5
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 3.6e-90 335.5 240 67.9
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 3.6e-90 335.5 240 67.9
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 3.6e-90 335.5 240 67.9
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 3.6e-90 335.5 240 68.3
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 3.1e-89 332.4 256 65.2
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 5.2e-89 331.6 240 67.1
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 5.2e-89 331.6 254 66.1
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.2e-88 330.5 213 72.8
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 2.0e-88 329.7 240 67.1
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.4e-88 328.9 254 65.7
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 5.8e-88 328.2 240 66.2
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 9.8e-88 327.4 228 68.4
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 1.3e-87 327.0 242 67.4
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 2.2e-87 326.2 240 65.8
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 3.7e-87 325.5 238 66.0
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 3.7e-87 325.5 238 66.0
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 3.7e-87 325.5 238 66.0
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 8.3e-87 324.3 240 65.0
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 1.1e-86 323.9 209 75.1
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 5.4e-86 321.6 245 64.1
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 1.6e-85 320.1 250 62.8
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.0e-84 317.4 249 62.7
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 1.3e-84 317.0 247 63.6
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 1.2e-80 303.9 246 61.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 4.9e-79 298.5 252 60.7
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 7.8e-77 291.2 189 71.4
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 2.5e-75 286.2 210 63.8
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 1.2e-74 283.9 248 56.0
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.1e-74 283.1 222 62.6
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.3e-73 279.6 254 59.4
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 6.8e-73 278.1 246 56.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.9e-63 246.1 186 65.6
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 3.9e-60 235.7 163 71.8
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.8e-50 203.0 139 71.2
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 3.5e-45 186.0 148 61.5
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 1.8e-44 183.7 144 63.9
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 9.6e-43 177.9 218 43.1
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 7.1e-38 161.8 113 70.8
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 1.0e-31 141.4 172 45.9
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 2.1e-29 133.7 103 63.1
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 3.0e-28 129.8 190 42.1
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 5.2e-12 75.9 44 72.7
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 4.4e-11 72.8 51 64.7
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 8.5e-07 58.5 39 69.2


User provided reference genes

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