Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.1e-185 651.7 346 100.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 3.2e-166 588.6 347 87.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 7.8e-165 583.9 346 87.0
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.3e-162 576.6 346 86.4
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.9e-150 536.2 340 77.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 9.3e-150 533.9 346 77.5
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.0e-148 530.4 327 80.4
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.5e-147 525.8 347 74.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.5e-147 525.8 344 76.5
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.8e-146 521.5 346 75.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.8e-146 521.5 346 74.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 6.2e-146 521.2 346 72.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.4e-145 520.0 350 72.6
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.7e-143 513.1 346 75.1
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.4e-142 510.0 346 74.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 5.5e-142 508.1 343 73.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 7.1e-142 507.7 346 71.1
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.2e-141 506.9 345 75.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-141 504.6 346 73.1
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.0e-141 504.6 343 72.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-140 503.4 346 74.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.9e-140 501.9 346 72.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.1e-139 500.4 348 71.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.5e-139 500.0 346 73.1
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.5e-139 500.0 348 72.1
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.5e-139 500.0 347 69.5
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.3e-139 498.4 340 70.6
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.3e-139 498.4 337 72.7
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.3e-138 496.9 343 70.3
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.3e-138 496.9 347 71.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.3e-138 496.9 344 74.7
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.8e-138 495.0 340 69.1
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 6.3e-138 494.6 346 73.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 8.2e-138 494.2 347 70.9
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.0e-137 490.7 356 67.4
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.5e-136 490.0 347 68.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.0e-136 489.6 349 73.4
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.9e-136 488.0 340 75.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.8e-135 485.3 346 71.7
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.2e-134 482.3 350 66.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 7.2e-134 481.1 342 70.5
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-133 479.6 346 69.4
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.1e-133 479.6 343 70.8
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.7e-133 479.2 348 68.7
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-133 479.2 346 72.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.3e-132 476.1 361 64.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.1e-132 474.9 346 71.1
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 5.1e-132 474.9 340 71.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 5.1e-132 474.9 344 69.5
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 8.8e-132 474.2 345 69.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-131 473.8 346 70.5
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.5e-131 473.4 346 67.1
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 4.3e-131 471.9 340 67.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.3e-131 471.9 345 67.2
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 7.4e-131 471.1 346 66.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 7.4e-131 471.1 346 69.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-130 470.3 340 71.5
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.7e-130 468.8 340 65.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.8e-130 468.4 342 70.8
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.3e-130 468.0 342 70.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.1e-129 467.2 346 69.9
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.1e-129 465.7 346 73.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 4.1e-129 465.3 366 63.7
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 9.1e-129 464.2 348 70.7
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.5e-128 463.4 346 70.8
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.6e-128 462.6 345 70.1
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 5.9e-128 461.5 347 71.2
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.9e-128 461.5 347 71.5
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.0e-127 460.7 343 70.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.0e-127 460.7 348 70.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.3e-127 460.3 343 66.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.9e-127 459.1 347 71.5
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 3.8e-127 458.8 343 66.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 3.8e-127 458.8 346 69.4
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 8.5e-127 457.6 354 64.4
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.4e-126 456.8 346 70.2
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-126 456.8 348 69.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-126 456.1 346 67.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 3.2e-126 455.7 340 69.1
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-125 453.8 348 68.7
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.2e-125 453.8 342 67.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.6e-125 453.4 340 68.2
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.0e-124 450.7 344 64.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.4e-124 450.3 446 54.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 1.8e-124 449.9 340 69.1
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.1e-123 447.2 348 63.8
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.0e-123 446.4 346 67.1
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.0e-123 446.4 346 66.8
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.2e-122 443.0 345 64.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.8e-122 442.6 307 70.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.3e-122 441.4 343 64.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.1e-121 440.7 342 62.9
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.8e-121 439.9 349 67.3
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.8e-121 439.9 344 63.7
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.1e-121 438.7 349 67.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.3e-119 433.7 346 62.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.7e-119 433.3 346 63.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 8.5e-119 431.0 344 62.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.4e-118 430.3 346 64.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.9e-118 429.9 344 61.6
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.5e-118 429.5 346 62.7
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.6e-117 426.8 347 61.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.7e-117 425.2 348 63.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.7e-117 425.2 347 65.1
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.0e-117 424.5 342 59.9
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-116 422.9 346 59.5
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 3.0e-116 422.5 346 61.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.9e-116 422.2 341 61.6
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.7e-116 421.4 348 66.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 5.7e-115 418.3 342 59.6
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-114 416.8 292 72.3
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.2e-114 416.4 349 64.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.2e-114 416.4 348 62.9
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.8e-114 416.0 346 59.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.1e-113 414.1 256 78.1
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.4e-113 413.7 358 59.2
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.4e-113 412.9 348 64.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.1e-113 412.5 346 57.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-113 412.1 345 57.7
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.0e-112 409.8 344 65.4
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.5e-112 408.7 361 56.0
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.0e-111 407.5 346 56.4
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-111 407.1 345 55.9
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.1e-110 404.1 305 68.9
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 7.2e-110 401.4 340 58.8
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.4e-108 397.1 343 58.9
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.3e-108 396.4 341 60.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.7e-107 391.0 296 66.6
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.7e-107 391.0 348 57.5
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.3e-106 390.6 290 72.4
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.7e-104 382.9 424 50.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 3.8e-103 379.0 344 58.1
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-102 376.7 336 58.9
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.6e-96 357.1 300 60.0
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.5e-94 350.5 352 58.2
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 6.8e-92 341.7 290 58.3
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.7e-90 337.0 294 66.3
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 4.1e-89 332.4 244 68.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.6e-88 330.5 246 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.2e-85 320.9 340 47.4
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.6e-85 319.3 240 67.1
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.0e-84 317.8 340 45.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.4e-84 317.4 282 57.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.2e-84 315.5 244 64.8
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.5e-83 313.9 241 65.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 6.4e-82 308.5 276 57.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 8.3e-82 308.1 224 71.9
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.0e-81 305.1 339 46.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.0e-79 301.2 187 77.0
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.3e-78 296.2 276 56.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.2e-75 287.7 346 46.8
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.9e-74 282.3 341 42.5
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.6e-72 277.3 340 46.5
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.0e-71 273.1 244 57.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.1e-70 271.2 258 50.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.5e-70 270.8 256 52.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.6e-70 268.9 244 62.3
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.4e-67 259.6 245 53.9
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.8e-67 258.8 245 55.9
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.2e-64 251.1 268 47.4
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 5.2e-60 235.7 144 73.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-56 224.2 130 79.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.3e-47 193.7 140 66.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-42 177.9 131 70.2
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 3.8e-42 176.4 102 77.5
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.3e-41 171.8 128 68.0
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 5.6e-38 162.5 125 65.6
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.0e-31 141.7 116 62.1
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.7e-23 112.5 67 73.1
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.7e-21 106.7 346 24.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.8e-21 106.3 163 33.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.5e-18 95.9 53 71.7
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-16 91.7 54 75.9
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 4.8e-13 79.7 217 25.8
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 4.5e-11 73.2 137 35.8
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.9e-09 67.8 103 40.8
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 5.5e-09 66.2 75 60.0
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 2.7e-08 63.9 39 74.4


User provided reference genes

Program Settings