Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.7e-85 319.7 210 100.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 8.3e-69 264.2 208 81.2
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.1e-68 263.8 208 87.5
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 4.1e-68 261.9 208 80.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 2.0e-54 216.5 208 73.1
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 5.8e-54 214.9 200 75.5
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.7e-50 203.4 202 76.2
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.5e-49 200.3 205 74.1
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.5e-49 200.3 201 76.1
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 3.1e-47 192.6 200 75.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 9.0e-47 191.0 210 73.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.2e-46 190.7 201 73.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.2e-46 190.7 200 74.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.2e-46 190.7 200 74.0
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.2e-46 190.7 227 66.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.0e-46 189.9 200 74.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.4e-46 189.1 210 71.4
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.4e-46 189.1 200 73.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 4.5e-46 188.7 208 70.2
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 5.8e-46 188.3 201 70.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.8e-46 188.3 205 71.7
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 7.6e-46 188.0 200 73.5
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.7e-45 186.8 202 73.3
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.7e-45 186.8 202 71.3
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.9e-45 186.0 208 71.2
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.9e-45 186.0 208 70.7
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.8e-45 185.7 208 71.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 4.9e-45 185.3 200 73.0
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.9e-45 185.3 200 73.0
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.4e-44 183.7 202 72.8
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.4e-44 183.7 202 69.3
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.4e-44 183.7 199 72.9
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.2e-44 182.6 202 70.3
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.2e-44 182.6 202 70.3
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 5.4e-44 181.8 201 65.7
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.1e-44 181.4 208 68.8
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.1e-44 181.4 208 68.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.2e-43 180.6 204 69.1
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.1e-43 179.9 201 71.6
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 3.5e-43 179.1 203 71.9
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.6e-43 178.7 195 72.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.0e-42 177.6 202 68.8
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.3e-42 177.2 203 69.5
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 6.7e-42 174.9 200 69.5
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 8.7e-42 174.5 202 69.8
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.9e-41 173.3 201 68.2
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.6e-41 171.8 200 71.0
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.4e-41 171.4 201 57.7
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.1e-40 169.9 203 68.5
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.8e-40 169.5 203 68.0
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 8.1e-40 167.9 201 69.2
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.8e-39 166.8 201 69.7
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.8e-39 166.8 200 67.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 3.1e-39 166.0 202 69.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 3.1e-39 166.0 202 68.8
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 4.0e-39 165.6 221 64.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 9.0e-39 164.5 193 69.4
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.0e-38 163.3 190 71.6
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.0e-38 163.3 196 69.4
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 3.4e-38 162.5 198 66.7
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.4e-38 162.5 197 71.6
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 4.5e-38 162.2 181 71.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 7.6e-38 161.4 205 67.8
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.7e-37 160.2 201 62.2
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 3.8e-37 159.1 210 66.7
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.8e-37 159.1 204 69.1
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 3.8e-37 159.1 214 65.0
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.9e-37 158.7 202 69.3
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.9e-37 158.7 202 69.3
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.2e-36 155.6 198 70.2
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 7.1e-36 154.8 206 67.5
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 7.1e-36 154.8 201 67.2
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 7.1e-36 154.8 256 48.0
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 9.3e-36 154.5 201 68.2
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.2e-35 154.1 202 65.8
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.1e-35 153.3 200 59.5
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.1e-35 153.3 207 59.9
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.7e-35 152.9 202 46.5
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.7e-35 152.9 194 66.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 3.5e-35 152.5 201 67.7
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 7.9e-35 151.4 188 56.4
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.0e-34 151.0 202 46.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.0e-34 151.0 201 62.2
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 66.2
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 6.7e-34 148.3 202 45.0
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 6.7e-34 148.3 202 45.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.7e-34 148.3 144 70.1
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 6.7e-34 148.3 203 64.0
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 8.7e-34 147.9 206 64.6
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 8.7e-34 147.9 201 65.7
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 8.7e-34 147.9 206 62.6
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.9e-33 146.7 203 63.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.5e-33 146.4 200 52.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.5e-33 146.4 207 52.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 3.3e-33 146.0 200 51.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.3e-33 145.6 203 60.6
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 9.6e-33 144.4 201 60.7
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.3e-32 144.1 202 64.4
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.1e-32 143.3 200 59.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 3.7e-32 142.5 200 64.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.8e-32 142.1 203 62.6
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-31 141.0 206 62.1
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-31 140.6 186 46.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-31 140.2 205 57.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.8e-31 140.2 206 63.6
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.4e-31 139.8 206 62.1
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 9.0e-31 137.9 204 52.9
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.5e-30 137.1 206 53.9
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 3.8e-29 132.5 203 62.1
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-28 131.0 200 52.5
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 2.5e-28 129.8 183 66.7
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 7.1e-28 128.3 201 61.7
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 6.7e-26 121.7 208 49.5
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 7.4e-25 118.2 231 44.2
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 6.3e-24 115.2 150 74.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-23 113.6 143 76.9
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.2e-22 110.9 142 56.3
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.2e-22 110.9 198 58.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.5e-22 110.5 151 72.2
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.6e-22 109.8 215 44.7
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.3e-21 107.5 201 36.8
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.7e-21 107.1 199 56.8
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.2e-20 102.8 134 56.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.9e-19 98.2 143 57.3
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 53.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 53.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-18 96.7 199 51.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-18 96.7 199 51.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 2.3e-18 96.7 199 51.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 2.3e-18 96.7 199 51.3
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 6.7e-18 95.1 201 35.8
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 6.7e-18 95.1 201 35.8
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-17 92.4 201 35.3
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.3e-16 90.9 136 66.2
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.7e-16 90.5 183 54.1
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 3.7e-16 89.4 205 35.1
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.1e-15 86.3 109 48.6
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.3e-13 80.9 146 37.7
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 2.2e-13 80.1 186 52.7
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.4e-12 77.4 59 69.5
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.4e-12 77.4 79 73.4
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.4e-12 77.4 179 34.1
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 9.4e-12 74.7 163 41.7
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.7e-09 65.5 111 57.7
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.7e-08 63.9 116 54.3
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 1.2e-06 57.8 59 49.2


User provided reference genes

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