Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 2112.4 1120 100.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1898.2 1132 87.7
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1895.2 1131 87.4
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1892.1 1128 87.9
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1855.9 1101 87.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1688.3 1130 76.7
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1681.8 1125 76.8
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1681.0 1129 76.8
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1673.7 1130 76.3
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1672.9 1127 76.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1667.5 1135 75.5
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1667.5 1136 75.5
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1665.2 1124 76.5
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1664.8 1128 77.3
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1664.4 1128 77.4
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1663.7 1135 76.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1662.9 1127 75.4
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1660.6 1129 76.5
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1658.7 1137 75.3
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1657.5 1126 76.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1657.1 1127 75.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1655.6 1125 74.8
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1650.2 1126 75.0
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1649.4 1125 75.1
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1125 75.2
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1648.3 1125 75.1
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1646.7 1137 74.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1645.2 1134 75.6
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1642.5 1125 74.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1125 74.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1639.0 1129 75.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1627.1 1126 73.7
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1122 74.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1124 73.4
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1623.6 1140 74.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1623.6 1126 73.6
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1122 74.2
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1619.0 1127 74.5
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1617.4 1134 75.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1612.4 1177 70.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1610.5 1134 73.1
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1606.3 1125 73.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1130 71.1
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1130 72.3
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1135 72.0
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1573.5 1133 72.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1132 71.5
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1565.8 1122 71.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1129 70.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1560.4 1126 72.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1559.7 1125 71.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1553.1 1128 71.2
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1547.3 1136 70.4
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1546.9 1136 70.1
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1545.4 1134 71.7
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1135 70.3
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1530.8 1128 70.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1526.9 1126 69.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1525.0 1124 70.4
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1524.2 1126 69.4
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1524.2 1126 69.4
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1524.2 1124 69.9
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1519.2 1126 69.2
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1518.8 1027 74.3
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1513.0 1122 69.6
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1512.7 1126 68.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1512.3 1125 69.6
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1511.9 1134 69.7
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1510.7 1130 69.1
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1509.6 1137 69.0
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1509.2 1124 69.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1508.4 1130 69.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1508.0 1130 68.8
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1507.7 1128 69.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 1122 69.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1506.1 1130 68.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1505.7 1125 68.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1505.7 1127 70.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1504.2 1123 70.1
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1500.3 1143 68.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1500.3 1143 68.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1498.4 1134 69.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1494.6 1073 71.9
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1494.2 1009 77.1
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1477.2 1124 67.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1476.1 1124 67.7
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1472.6 1125 67.5
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1470.3 1125 67.3
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1468.0 1124 67.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1468.0 1124 66.8
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1465.3 1093 69.4
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1452.2 1073 70.1
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1445.3 1065 70.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1440.2 1032 71.5
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1394.8 921 78.0
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1380.9 1144 64.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1364.7 1120 65.1
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1351.3 1125 64.4
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1348.6 922 74.2
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1338.6 1100 64.4
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1324.3 1115 62.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1299.3 1081 62.3
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 1105 59.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1260.7 889 72.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1256.9 921 70.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1177.2 822 75.4
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1089.7 935 61.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 3.1e-311 1072.0 794 71.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 2.9e-309 1065.4 1065 51.7
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 7.3e-297 1024.2 1106 48.4
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 6.4e-293 1011.1 1074 48.5
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.8e-287 993.0 669 74.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.3e-277 960.3 1068 48.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.0e-270 936.4 760 63.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.4e-239 833.9 935 52.1
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.5e-237 825.1 606 72.4
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.9e-212 743.8 633 60.2
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.4e-210 737.6 1092 40.2
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.9e-157 560.1 424 70.5
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 7.9e-150 535.8 366 73.5
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 3.8e-136 490.3 432 62.3
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 8.0e-118 429.5 354 63.0
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.0e-96 359.4 317 61.5
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.0e-88 331.3 1218 27.6
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.8e-86 324.7 335 60.3
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 2.8e-86 324.7 1134 28.0
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.2e-84 319.3 313 57.5
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.6e-78 297.7 364 46.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.5e-65 254.6 328 46.0
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.7e-62 244.6 322 46.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 7.7e-36 157.1 100 83.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 7.4e-31 140.6 150 58.7
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.3e-30 139.8 667 22.8
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-28 132.9 96 75.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 4.5e-28 131.3 107 70.1
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.3e-27 129.8 96 74.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 3.1e-21 108.6 69 72.5
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 9.1e-21 107.1 68 72.1
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 9.8e-07 60.5 56 64.3


User provided reference genes

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