Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.5e-220 769.2 382 100.0
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.2e-168 595.9 385 78.7
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.0e-141 505.8 381 69.8
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.3e-125 453.0 377 59.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 6.7e-125 451.4 388 57.0
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.1e-124 450.7 388 57.2
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.0e-120 437.6 384 56.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.7e-120 436.8 390 55.1
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.2e-119 432.6 384 54.9
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.2e-118 430.6 388 58.5
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.6e-118 430.3 384 54.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.9e-118 427.9 280 78.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 7.9e-118 427.9 388 57.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.3e-117 426.4 391 53.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 5.1e-117 425.2 383 55.4
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 5.1e-117 425.2 385 51.2
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 3.3e-116 422.5 383 52.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 3.3e-116 422.5 385 55.8
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 5.7e-116 421.8 383 52.2
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.2e-115 417.9 387 56.8
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.4e-114 417.2 383 52.5
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.3e-114 415.2 359 56.5
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 7.0e-114 414.8 359 56.3
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 5.9e-113 411.8 390 54.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.7e-112 410.2 387 52.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.9e-112 409.5 389 54.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 6.5e-112 408.3 384 56.2
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.1e-111 407.5 386 54.4
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.1e-111 407.5 403 50.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.5e-111 405.2 385 53.8
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.5e-108 397.1 390 53.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 7.0e-106 388.3 413 48.4
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.0e-105 386.7 336 54.5
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.0e-105 386.7 443 44.9
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.0e-105 386.7 388 50.5
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.3e-104 384.0 387 50.9
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.7e-104 383.6 384 53.6
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.7e-104 383.6 389 50.4
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.5e-103 378.6 452 43.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 7.2e-103 378.3 385 47.3
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 3.6e-102 375.9 395 47.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 4.7e-102 375.6 397 47.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.1e-102 375.2 383 48.8
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 5.2e-101 372.1 386 50.8
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.4e-100 369.4 384 50.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 5.7e-100 368.6 381 48.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 8.3e-99 364.8 386 50.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.1e-98 364.4 394 47.2
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.8e-98 363.6 393 47.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 4.1e-98 362.5 387 46.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.2e-97 360.9 373 49.6
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.5e-97 359.0 498 42.4
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.7e-96 357.1 407 47.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-95 353.6 362 51.9
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.8e-93 347.1 337 49.6
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-92 344.4 366 46.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-90 337.0 385 47.5
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 4.1e-90 335.9 379 47.2
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.4e-90 335.5 367 46.0
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 7.0e-90 335.1 367 45.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 7.0e-90 335.1 367 45.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 2.0e-89 333.6 367 45.5
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.0e-89 333.6 401 45.1
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 8.6e-88 328.2 378 43.1
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.9e-87 327.0 365 44.9
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.2e-83 313.5 388 46.4
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 5.9e-81 305.4 388 45.4
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.3e-80 304.3 384 43.0
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.7e-80 303.9 420 41.2
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.0e-77 292.7 390 41.3
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.2e-76 291.2 230 60.4
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.1e-74 282.7 309 47.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.0e-73 280.4 280 50.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.0e-73 280.4 279 50.9
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.7e-72 277.3 408 39.5
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 6.6e-72 275.4 313 50.2
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 3.1e-69 266.5 279 49.1
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 8.9e-69 265.0 363 41.3
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.3e-67 261.2 266 51.5
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 8.3e-67 258.5 376 38.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-66 257.7 374 40.1
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.4e-66 255.8 213 58.7
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.6e-65 252.7 283 45.9
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.1e-63 248.1 285 49.5
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 7.3e-63 245.4 280 45.0
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 4.0e-61 239.6 277 46.2
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 3.7e-59 233.0 215 54.4
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.2e-58 229.9 260 46.2
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.0e-56 223.4 258 46.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.0e-56 223.4 265 48.3
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.8e-54 216.9 253 44.7
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.8e-53 214.2 291 39.5
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.4e-53 213.8 267 45.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 6.8e-53 212.2 262 45.4
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 8.4e-51 205.3 292 41.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.3e-50 201.8 240 44.2
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.1e-49 200.7 240 43.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.9e-47 194.1 243 44.4
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 5.6e-47 192.6 194 49.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.1e-45 186.8 238 44.5
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.2e-43 180.6 251 40.2
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 6.4e-43 179.1 251 40.2
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-42 177.9 240 40.8
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-42 177.9 218 44.5
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.4e-42 177.9 297 37.7
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.4e-42 177.2 251 39.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.4e-42 177.2 211 44.1
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 9.3e-42 175.3 250 38.8
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 6.0e-41 172.6 157 54.1
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 3.9e-40 169.9 252 42.9
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.4e-39 165.6 198 43.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.4e-39 165.6 250 39.2
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.0e-37 159.8 238 41.6
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 6.9e-37 159.1 240 42.9
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 9.0e-37 158.7 293 33.8
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.9e-35 153.7 253 37.9
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.9e-35 152.9 250 36.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.4e-34 151.4 214 38.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.4e-34 150.6 250 36.4
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 2.1e-33 147.5 127 55.9
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.1e-33 147.5 169 44.4
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.7e-33 147.1 251 37.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 4.6e-33 146.4 251 37.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.3e-32 144.8 146 52.1
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.0e-32 143.7 254 37.4
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 8.7e-32 142.1 250 36.0
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.5e-31 141.4 266 36.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-31 140.6 285 30.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 9.6e-31 138.7 266 35.7
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-30 137.1 266 36.1
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 2.8e-30 137.1 266 36.1
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 6.2e-30 136.0 72 77.8
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.5e-28 129.8 176 43.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 5.8e-28 129.4 255 34.9
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.3e-27 128.3 123 52.0
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-27 127.9 215 34.0
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.4e-26 124.8 268 31.7
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.6e-25 121.3 64 75.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.1e-24 116.3 161 39.8
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 5.5e-18 96.3 261 28.0
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 9.3e-18 95.5 130 43.8
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.8e-13 81.3 65 58.5
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.3e-11 75.1 113 40.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 2.5e-10 70.9 81 44.4
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 5.5e-10 69.7 120 35.8
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 7.2e-10 69.3 129 36.4
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.8e-08 64.7 178 29.8
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 8.8e-08 62.4 125 34.4
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 5.7e-07 59.7 83 39.8
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-06 58.2 77 40.3


User provided reference genes

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