Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-135 486.5 262 100.0
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-132 476.1 262 96.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.0e-132 475.3 262 96.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 6.6e-132 474.2 262 96.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.1e-131 473.4 262 96.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.6e-130 468.4 262 95.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 88.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 88.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 88.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 88.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 87.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 87.4
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 87.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.2e-120 436.8 262 87.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 87.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 87.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 86.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.4e-120 435.3 261 85.4
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 86.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 85.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 85.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 85.9
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 86.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.5
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 84.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 85.9
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.9
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 84.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 83.6
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-117 426.8 263 84.4
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 83.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.4
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.7
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 83.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 83.2
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 7.9e-117 424.1 263 84.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 82.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 83.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.7
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 83.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 83.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.2
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.2
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.0e-116 422.2 263 83.3
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 84.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 85.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.4
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 82.8
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 82.4
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 82.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 82.8
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 82.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 82.1
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 81.3
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 83.2
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 83.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 5.6e-115 417.9 263 82.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 81.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.8
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 81.7
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 81.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.1e-114 416.0 259 84.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 82.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 83.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 80.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 9.0e-113 410.6 263 80.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 9.0e-113 410.6 253 81.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.5e-112 408.3 264 80.3
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 80.5
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 8.4e-111 404.1 264 80.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 5.5e-110 401.4 262 82.1
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 2.1e-109 399.4 247 85.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.6
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.6
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.0
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.5e-109 398.7 263 80.6
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.5e-109 398.7 264 79.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 4.6e-109 398.3 262 78.6
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.0e-109 397.9 247 85.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 78.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 78.2
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-108 396.7 253 83.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.6
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 78.6
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 79.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 77.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 78.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 78.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 78.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 80.6
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 77.9
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 77.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.1e-107 393.7 263 80.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 77.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 9.6e-107 390.6 255 80.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.3e-106 390.2 270 76.3
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.1e-106 389.4 270 76.7
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.7e-106 388.7 263 79.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 79.1
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.3
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.8e-103 378.6 248 80.6
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.8e-103 378.6 263 78.3
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 8.7e-100 367.5 263 76.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-99 366.7 262 75.2
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.8e-98 362.5 264 75.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.1e-97 359.0 262 74.8
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.3e-95 353.6 218 85.3
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.2e-95 352.8 249 73.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.5e-95 350.9 263 69.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.1e-94 350.5 241 79.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.4e-94 350.1 210 86.7
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.1e-93 346.3 219 80.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.9e-93 344.4 234 77.8
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 5.1e-92 341.7 223 76.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-91 340.1 214 82.7
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.7e-90 335.5 263 66.9
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.7e-90 335.5 262 69.8
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.3e-87 327.0 219 75.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 7.0e-81 304.7 267 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 8.5e-79 297.7 218 69.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.5e-78 296.2 245 62.0
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.4e-78 294.3 250 68.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.3e-76 289.7 204 76.5
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.8e-76 287.7 247 66.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.0e-75 286.6 250 64.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 5.3e-73 278.5 208 68.3
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-72 276.6 263 60.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.7e-71 273.5 262 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.2e-71 273.1 270 57.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.2e-66 256.5 211 63.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.8e-58 229.6 235 60.0
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-55 220.7 243 50.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.8e-55 219.2 130 85.4
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.8e-52 208.4 245 50.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-51 207.2 138 79.7
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.7e-51 205.3 120 85.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.1e-45 186.8 118 84.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.3e-44 183.3 179 57.5
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.2e-35 154.5 127 68.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-35 154.1 191 49.2
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.3e-30 136.3 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.3e-23 113.6 69 84.1


User provided reference genes

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