Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-57 225.7 113 100.0
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.6e-50 202.6 114 89.5
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.5e-43 178.7 119 79.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.7e-42 175.3 113 82.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 5.7e-24 114.4 118 55.1
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.7e-23 112.8 131 53.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.2e-22 108.6 121 52.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.1e-22 108.2 125 51.2
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 9.2e-22 107.1 120 52.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.2e-21 106.7 138 47.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 2.7e-21 105.5 117 52.1
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.5e-21 105.1 128 50.8
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 3.5e-21 105.1 115 50.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 7.8e-21 104.0 126 48.4
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 7.8e-21 104.0 114 52.6
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 7.8e-21 104.0 130 50.8
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-20 103.2 121 49.6
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.3e-20 103.2 121 49.6
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-20 103.2 121 50.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-20 103.2 125 47.2
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.3e-20 103.2 126 49.2
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.3e-20 103.2 131 48.1
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.7e-20 102.8 120 52.5
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.7e-20 102.8 106 54.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.3e-20 102.4 106 53.8
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.0e-20 102.1 126 47.6
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.0e-20 102.1 121 48.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.0e-20 102.1 124 50.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 6.6e-20 100.9 121 47.1
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 6.6e-20 100.9 121 47.1
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 6.6e-20 100.9 121 47.1
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 6.6e-20 100.9 121 47.1
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.6e-20 100.9 115 50.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 6.6e-20 100.9 111 49.5
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 8.6e-20 100.5 121 48.8
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.6e-20 100.5 115 51.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.6e-20 100.5 128 50.0
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.6e-20 100.5 134 48.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 8.6e-20 100.5 134 48.5
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-19 100.1 120 47.5
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-19 100.1 126 47.6
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-19 100.1 126 47.6
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-19 99.8 121 47.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.3e-19 98.6 129 46.5
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.3e-19 98.6 121 49.6
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-19 98.2 121 46.3
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 4.3e-19 98.2 121 46.3
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 4.3e-19 98.2 121 49.6
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 4.3e-19 98.2 135 45.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.3e-19 98.2 123 46.3
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-19 97.8 121 47.1
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-19 97.8 122 48.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.6e-19 97.8 134 49.3
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 5.6e-19 97.8 121 49.6
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 5.6e-19 97.8 124 45.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 5.6e-19 97.8 125 48.0
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.3e-19 97.4 121 47.9
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 7.3e-19 97.4 124 45.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 7.3e-19 97.4 119 45.4
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 9.5e-19 97.1 122 48.4
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 9.5e-19 97.1 122 47.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 9.5e-19 97.1 122 48.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 9.5e-19 97.1 122 48.4
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 9.5e-19 97.1 123 43.1
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-18 96.7 122 47.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-18 96.7 122 47.5
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-18 96.3 122 48.4
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-18 96.3 122 46.7
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-18 96.3 122 48.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-18 96.3 121 48.8
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.6e-18 96.3 115 48.7
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-18 95.9 121 45.5
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-18 95.9 121 45.5
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-18 95.5 121 45.5
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-18 95.5 121 45.5
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.8e-18 95.5 121 45.5
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.6e-18 95.1 126 50.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-18 95.1 122 46.7
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.6e-18 95.1 131 51.1
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.6e-18 95.1 119 46.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.6e-18 95.1 123 45.5
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-18 94.7 122 46.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 4.7e-18 94.7 119 47.1
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 6.2e-18 94.4 121 44.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.2e-18 94.4 123 43.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.0e-18 94.0 120 45.8
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 8.0e-18 94.0 124 43.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 8.0e-18 94.0 123 43.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.3e-17 92.4 118 43.2
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.3e-17 92.4 118 46.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-17 92.0 122 45.9
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.1e-17 92.0 123 46.3
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.8e-17 90.9 123 45.5
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 6.8e-17 90.9 122 42.6
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 6.8e-17 90.9 120 50.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.2e-16 90.1 127 47.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.5e-16 89.7 116 44.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.0e-16 89.4 122 46.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.6e-16 89.0 127 46.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.6e-16 89.0 123 43.9
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.6e-16 89.0 126 42.9
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.6e-16 89.0 104 46.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 5.8e-16 87.8 123 43.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 5.8e-16 87.8 115 44.3
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 5.8e-16 87.8 115 44.3
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 5.8e-16 87.8 127 45.7
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.5e-16 87.4 123 44.7
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-15 86.7 127 44.1
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.3e-15 86.7 115 44.3
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-15 86.7 112 43.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.3e-15 86.7 115 44.3
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-15 86.3 122 43.4
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-15 86.3 122 43.4
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-15 85.9 123 43.1
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-15 85.9 121 47.1
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.9e-15 85.5 103 52.4
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 8.3e-15 84.0 119 46.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.3e-15 84.0 127 40.9
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 8.3e-15 84.0 129 44.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-14 83.6 126 38.1
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.4e-14 82.4 124 44.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 3.2e-14 82.0 134 38.8
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.2e-14 82.0 126 49.2
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.4e-14 81.3 117 42.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 7.0e-14 80.9 115 45.2
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 9.2e-14 80.5 128 42.2
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 9.2e-14 80.5 116 42.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 9.2e-14 80.5 108 48.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.2e-14 80.5 112 42.0
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.2e-13 80.1 95 46.3
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.2e-13 80.1 106 46.2
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.2e-13 80.1 124 40.3
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-13 79.7 121 43.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-13 78.6 125 44.0
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.5e-13 78.6 124 43.5
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-13 78.6 110 43.6
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.5e-13 78.6 112 42.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.6e-13 78.2 123 42.3
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.6e-13 78.2 109 48.6
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 6.0e-13 77.8 111 44.1
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 6.0e-13 77.8 132 37.9
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.8e-13 77.4 105 47.6
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.8e-13 77.4 121 43.0
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 7.8e-13 77.4 121 39.7
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.0e-12 77.0 130 42.3
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.9e-12 75.1 110 42.7
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 5.0e-12 74.7 121 41.3
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 5.0e-12 74.7 118 44.9
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.5e-11 72.4 121 40.5
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 2.5e-11 72.4 106 44.3
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 3.3e-11 72.0 112 40.2
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 4.3e-11 71.6 152 34.9
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 7.3e-11 70.9 127 40.9
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 7.3e-11 70.9 127 40.9
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 7.3e-11 70.9 127 40.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 9.5e-11 70.5 114 37.7
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 9.5e-11 70.5 115 40.9
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.2e-10 70.1 108 41.7
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.6e-10 69.7 129 39.5
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.6e-10 68.6 117 37.6
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 3.6e-10 68.6 105 40.0
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.7e-10 68.2 113 37.2
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.2e-10 67.8 137 35.8
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.1e-10 67.4 97 39.2
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.4e-09 66.6 108 39.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.1e-09 65.5 54 51.9
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.1e-09 65.5 109 39.4
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 5.2e-09 64.7 112 37.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.6e-08 62.4 100 39.0
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.4e-08 62.0 99 41.4
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.4e-08 61.6 100 37.0
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 7.5e-08 60.8 37 67.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 7.5e-08 60.8 108 37.0
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 7.5e-08 60.8 108 37.0
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 7.5e-08 60.8 108 37.0
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-07 60.1 141 33.3
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 1.7e-07 59.7 89 42.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-06 56.2 68 39.7
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-06 55.5 155 31.0
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.1e-06 55.1 122 41.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 5.4e-06 54.7 54 50.0


User provided reference genes

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