Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.7e-103 378.6 185 100.0
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 2.6e-29 132.9 117 58.1
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 2.2e-28 129.8 121 52.9
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 2.4e-27 126.3 116 52.6
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 9.1e-27 124.4 121 51.2
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.2e-24 115.5 125 40.8
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 6.1e-23 111.7 124 37.1
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.2e-22 108.6 126 42.9
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 8.8e-22 107.8 124 36.3
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.5e-21 107.1 126 42.9
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.4e-21 105.5 125 42.4
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 9.7e-21 104.4 125 42.4
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.7e-21 104.4 125 42.4
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 9.7e-21 104.4 121 43.8
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.2e-20 103.2 121 45.5
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-20 103.2 121 45.5
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 2.8e-20 102.8 113 46.9
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.3e-20 101.7 127 40.9
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.3e-20 101.7 125 43.2
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.3e-20 101.7 149 38.9
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 6.3e-20 101.7 136 41.2
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.1e-19 100.9 121 39.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.8e-19 100.1 151 37.1
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.8e-19 100.1 113 39.8
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.4e-19 99.8 112 42.0
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.1e-19 99.4 113 42.5
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 3.1e-19 99.4 130 42.3
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 3.1e-19 99.4 130 42.3
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.1e-19 99.0 122 42.6
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 5.3e-19 98.6 115 42.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 9.1e-19 97.8 128 44.5
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 9.1e-19 97.8 126 39.7
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.6e-18 97.1 126 41.3
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.6e-18 97.1 124 37.1
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.6e-18 97.1 121 42.1
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.6e-18 97.1 115 43.5
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.0e-18 96.7 111 44.1
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 2.7e-18 96.3 108 47.2
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 3.5e-18 95.9 126 40.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 4.5e-18 95.5 127 40.2
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.9e-18 95.1 127 39.4
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.7e-18 94.7 127 37.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 7.7e-18 94.7 115 42.6
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 1.0e-17 94.4 108 46.3
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 1.0e-17 94.4 111 43.2
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.3e-17 94.0 108 46.3
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.3e-17 94.0 106 44.3
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.7e-17 93.6 113 42.5
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-17 93.6 125 40.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.2e-17 93.2 127 39.4
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-17 93.2 126 38.1
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-17 93.2 128 37.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.9e-17 92.8 127 37.8
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.9e-17 92.8 108 45.4
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.9e-17 92.8 108 45.4
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-17 92.4 108 42.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 6.5e-17 91.7 103 39.8
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 8.5e-17 91.3 128 41.4
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.1e-16 90.9 115 40.9
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.5e-16 90.5 129 40.3
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.9e-16 90.1 129 39.5
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.5e-16 89.7 126 38.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 3.2e-16 89.4 121 37.2
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 5.5e-16 88.6 125 37.6
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 5.5e-16 88.6 126 39.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 7.2e-16 88.2 120 37.5
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 7.2e-16 88.2 116 39.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.6e-15 87.0 130 36.9
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 3.6e-15 85.9 114 41.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 4.7e-15 85.5 127 36.2
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 6.1e-15 85.1 126 37.3
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.0e-14 84.3 146 34.9
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-14 84.0 142 34.5
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.8e-14 83.6 104 43.3
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.3e-14 83.2 126 35.7
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 5.2e-14 82.0 132 36.4
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.2e-14 82.0 114 38.6
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 6.8e-14 81.6 112 39.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 6.8e-14 81.6 114 38.6
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 6.8e-14 81.6 114 38.6
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.5e-13 80.5 160 31.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.5e-13 80.5 130 35.4
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.0e-13 80.1 153 31.4
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.0e-13 80.1 130 35.4
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.6e-13 79.7 114 36.8
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.6e-13 79.7 126 29.4
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.4e-13 79.0 116 34.5
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 4.4e-13 79.0 103 38.8
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.5e-13 78.2 107 35.5
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.5e-13 78.2 126 34.1
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 9.8e-13 77.8 190 32.6
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 9.8e-13 77.8 184 34.8
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.7e-12 77.0 122 36.1
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.8e-12 76.3 117 35.9
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 3.7e-12 75.9 110 35.5
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 3.7e-12 75.9 173 31.2
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 8.3e-12 74.7 145 33.1
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 8.3e-12 74.7 152 34.9
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.1e-11 74.3 134 34.3
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-11 73.6 182 30.8
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-11 73.6 145 33.1
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.4e-11 73.2 116 34.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 4.1e-11 72.4 145 33.1
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 5.4e-11 72.0 145 33.1
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 5.4e-11 72.0 207 29.0
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 7.0e-11 71.6 115 35.7
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 9.1e-11 71.2 116 32.8
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.2e-10 70.9 104 37.5
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.7e-10 69.7 143 30.1
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 3.5e-10 69.3 117 35.0
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 5.9e-10 68.6 117 35.0
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 2.9e-09 66.2 147 29.3
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.9e-09 66.2 147 29.3
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 2.9e-09 66.2 147 29.3
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 3.8e-09 65.9 116 34.5
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 5.0e-09 65.5 147 29.3
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 5.0e-09 65.5 119 36.1
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 6.5e-09 65.1 80 38.8
ECA233G6213 Erigeron canadensis HOM05D000896 ORTHO05D000594 8.6e-09 64.7 126 32.5
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.1e-08 64.3 104 34.6
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.9e-08 63.5 76 44.7
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.5e-08 63.2 149 30.9
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.2e-08 62.8 64 43.8
Phvul.008G266500 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 5.5e-08 62.0 162 27.2
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 9.5e-08 61.2 147 29.3
MD11G1017200 Malus domestica HOM05D000466 ORTHO05D000331 9.5e-08 61.2 89 37.1
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 9.5e-08 61.2 84 35.7
ECA233G4381 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.2e-07 60.8 108 33.3
Sed0016322 Sechium edule HOM05D000896 ORTHO05D000594 1.6e-07 60.5 169 32.0
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 4.7e-07 58.9 126 33.3
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 6.1e-07 58.5 103 34.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 8.0e-07 58.2 147 28.6
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.0e-06 57.8 147 28.6
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.0e-06 57.8 147 28.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-06 57.4 181 23.8
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.8e-06 57.0 84 33.3
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 2.3e-06 56.6 112 28.6
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.0e-06 56.2 105 32.4
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 3.0e-06 56.2 110 28.2
TAR375G0070 Trochodendron aralioides HOM05D000466 ORTHO05D000331 3.0e-06 56.2 98 34.7
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 4.0e-06 55.8 153 27.5
FAN16G0323 Fragaria x ananassa HOM05D000466 ORTHO05D000331 4.0e-06 55.8 89 34.8
Peaxi162Scf00207g00109 Petunia axillaris HOM05D000466 ORTHO05D000331 4.0e-06 55.8 92 30.4
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 4.0e-06 55.8 144 27.1
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 5.2e-06 55.5 100 37.0
Prupe.6G015000 Prunus persica HOM05D000466 ORTHO05D000331 5.2e-06 55.5 89 34.8
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 5.2e-06 55.5 83 36.1
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 6.8e-06 55.1 153 27.5
Gohir.A12G043480 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.8e-06 55.1 110 28.2
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.8e-06 55.1 110 28.2
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.8e-06 55.1 110 28.2
Gohir.D12G042950 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.8e-06 55.1 110 28.2
Gohir.D12G043450 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.8e-06 55.1 110 28.2
MBI18_g09775_MAGBIO Magnolia biondii HOM05D060425 ORTHO05D048574 6.8e-06 55.1 110 31.8
MD03G1016500 Malus domestica HOM05D000466 ORTHO05D000331 6.8e-06 55.1 89 34.8
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 8.8e-06 54.7 123 27.6
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 8.8e-06 54.7 123 27.6


User provided reference genes

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