Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 3.6e-73 278.1 135 100.0
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 5.7e-63 244.2 135 88.1
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 1.8e-61 239.2 135 85.9
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.9e-53 212.6 135 71.9
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 9.2e-53 210.3 135 71.1
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 2.7e-52 208.8 135 74.1
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 3.5e-52 208.4 135 72.6
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 4.6e-52 208.0 135 72.6
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 3.0e-51 205.3 135 70.4
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 1.1e-50 203.4 135 70.4
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 1.1e-50 203.4 135 70.4
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 1.1e-50 203.4 135 71.9
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 2.5e-50 202.2 135 71.1
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 3.3e-50 201.8 136 70.6
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 5.6e-50 201.1 135 70.4
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 9.5e-50 200.3 135 68.1
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 1.2e-49 199.9 135 70.4
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 2.1e-49 199.1 135 71.1
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 1.5e-47 193.0 135 66.7
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 7.5e-47 190.7 135 68.9
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 7.5e-47 190.7 135 67.4
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 3.5e-44 181.8 135 62.2
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 7.8e-44 180.6 135 65.9
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 2.3e-43 179.1 135 65.2
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 6.6e-43 177.6 135 63.0
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 1.1e-42 176.8 135 64.4
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 3.3e-42 175.3 139 63.3
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 4.3e-42 174.9 138 62.3
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 5.6e-42 174.5 135 63.7
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 1.6e-41 172.9 135 63.7
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 2.8e-41 172.2 139 62.6
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 3.6e-41 171.8 139 62.6
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 8.1e-41 170.6 139 61.2
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 1.1e-40 170.2 139 61.9
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 1.1e-40 170.2 139 61.9
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 1.1e-40 170.2 139 61.9
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 2.3e-40 169.1 139 61.9
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 5.2e-40 167.9 135 62.2
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 8.9e-40 167.2 135 63.7
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 2.6e-39 165.6 135 60.7
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 8.4e-38 160.6 139 59.0
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 1.1e-37 160.2 145 57.2
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 5.4e-37 157.9 135 57.0
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 9.2e-37 157.1 130 61.5
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 4.6e-36 154.8 114 67.5
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 6.0e-36 154.5 117 65.8
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 7.8e-36 154.1 114 64.0
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 7.8e-36 154.1 125 61.6
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 2.1e-33 146.0 114 64.9
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 2.8e-33 145.6 135 57.0
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 2.4e-32 142.5 191 46.6
A09p54260 Brassica napus HOM05D007572 ORTHO05D009535 6.9e-32 141.0 126 57.1
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 2.2e-30 136.0 186 43.5
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 5.1e-27 124.8 149 47.0
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 3.3e-26 122.1 136 46.3
Peaxi162Scf00058g02018 Petunia axillaris HOM05D007572 ORTHO05D009535 5.6e-26 121.3 118 55.1
BcaC07g40711 Brassica carinata HOM05D007572 ORTHO05D009535 1.6e-25 119.8 125 53.6
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 9.0e-24 114.0 64 78.1
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 2.0e-23 112.8 64 78.1
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 5.8e-23 111.3 172 39.5
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 5.8e-23 111.3 64 78.1
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 5.8e-23 111.3 141 46.8
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 8.4e-22 107.5 74 71.6
Pp3c17_19540 Physcomitrium patens HOM05D007572 ORTHO05D009535 1.1e-21 107.1 140 45.0
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 3.2e-21 105.5 64 75.0
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 4.2e-21 105.1 64 78.1
Gorai.001G147500 Gossypium raimondii HOM05D007572 ORTHO05D009535 7.1e-21 104.4 68 67.6
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 3.5e-20 102.1 92 54.3
Thecc.01G323600 Theobroma cacao HOM05D007572 ORTHO05D009535 6.0e-20 101.3 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.110 Anthoceros agrestis HOM05D007572 ORTHO05D009535 7.9e-20 100.9 139 40.3
ClCG11G013240 Citrullus lanatus HOM05D007572 ORTHO05D009535 1.3e-19 100.1 59 81.4
QL12p034502 Quercus lobata HOM05D007572 ORTHO05D009535 1.8e-19 99.8 72 65.3
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 3.0e-19 99.0 64 70.3
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 6.7e-19 97.8 72 65.3
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 1.5e-18 96.7 70 67.1
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 5.6e-18 94.7 54 81.5
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 5.6e-18 94.7 53 79.2
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 1.3e-17 93.6 67 62.7
Ciclev10023453m.g Citrus clementina HOM05D007572 ORTHO05D009535 2.4e-16 89.4 53 77.4
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 6.9e-16 87.8 78 55.1
GSVIVG01028266001 Vitis vinifera HOM05D007572 ORTHO05D009535 6.9e-16 87.8 64 65.6
CBR_g88332 Chara braunii HOM05D007572 ORTHO05D009535 1.2e-15 87.0 160 32.5
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.5e-15 85.1 64 60.9
Ciclev10024492m.g Citrus clementina HOM05D007572 ORTHO05D009535 7.6e-15 84.3 51 72.5
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 7.6e-15 84.3 50 74.0
TAR636G1955 Trochodendron aralioides HOM05D007572 ORTHO05D009535 9.9e-15 84.0 56 69.6
GSVIVG01028267001 Vitis vinifera HOM05D007572 ORTHO05D009535 4.9e-14 81.6 73 52.1
SEGI_13004 Sequoiadendron giganteum HOM05D007572 ORTHO05D009535 5.5e-13 78.2 77 49.4
CARHR172530 Cardamine hirsuta HOM05D007572 ORTHO05D009535 7.1e-13 77.8 67 55.2
Glyma.19G220500 Glycine max HOM05D007572 ORTHO05D009535 7.1e-13 77.8 142 38.0
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 2.3e-11 72.8 42 78.6
Gohir.A12G120600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 8.7e-11 70.9 55 65.5
BcaB07g33721 Brassica carinata HOM05D007572 ORTHO05D009535 4.3e-10 68.6 60 55.0
Os07g0637100 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 7.4e-10 67.8 54 59.3
Os07g0637150 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 2.4e-08 62.8 54 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2777 Anthoceros agrestis HOM05D007572 ORTHO05D009535 6.9e-08 61.2 66 43.9
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 1.5e-07 60.1 53 58.5


User provided reference genes

Program Settings