Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 3.8e-197 691.4 381 100.0
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.8e-85 320.5 463 48.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.3e-72 277.7 451 46.3
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 8.0e-70 268.5 463 44.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.5e-36 157.9 139 54.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.0e-36 157.5 143 55.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.4e-36 156.8 240 42.5
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.4e-36 156.4 140 55.0
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.7e-35 154.5 140 54.3
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 4.9e-35 152.9 209 45.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 8.4e-35 152.1 206 45.1
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.1e-34 151.8 120 60.8
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.4e-34 151.4 121 58.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-34 151.4 134 56.0
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.9e-34 151.0 138 55.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.9e-34 151.0 138 55.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.4e-34 150.6 123 56.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.4e-34 150.6 140 54.3
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.2e-34 150.2 152 50.7
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 5.4e-34 149.4 120 61.7
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 7.1e-34 149.1 132 54.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 7.1e-34 149.1 123 58.5
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.1e-34 149.1 123 58.5
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 9.3e-34 148.7 135 53.3
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 9.3e-34 148.7 119 61.3
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 9.3e-34 148.7 119 61.3
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.2e-33 148.3 132 54.5
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.2e-33 148.3 134 56.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.2e-33 148.3 135 53.3
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.6e-33 147.9 132 54.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.6e-33 147.9 132 54.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.6e-33 147.9 134 54.5
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 4.6e-33 146.4 139 51.1
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 4.6e-33 146.4 142 52.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.0e-32 145.2 132 53.8
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.0e-32 145.2 239 40.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.0e-32 145.2 122 57.4
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.3e-32 144.8 156 48.1
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.3e-32 144.8 129 55.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.3e-32 144.8 147 49.7
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.0e-32 143.7 141 50.4
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 3.9e-32 143.3 156 49.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 5.1e-32 142.9 120 55.8
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 6.6e-32 142.5 133 51.1
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 6.6e-32 142.5 156 48.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 6.6e-32 142.5 140 50.0
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 8.7e-32 142.1 121 57.9
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 8.7e-32 142.1 211 42.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.1e-31 141.7 159 50.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.1e-31 141.7 159 50.9
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-31 141.7 120 54.2
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.1e-31 141.7 120 54.2
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.5e-31 141.4 142 50.7
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-31 141.4 120 54.2
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.5e-31 141.4 150 51.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.5e-31 141.4 139 52.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.9e-31 141.0 133 51.9
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.9e-31 141.0 133 51.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.9e-31 141.0 143 48.3
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.9e-31 141.0 120 55.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.5e-31 140.6 123 52.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.3e-31 140.2 159 50.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-31 140.2 112 59.8
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.3e-31 140.2 162 50.0
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.3e-31 140.2 111 59.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 5.6e-31 139.4 122 56.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 7.3e-31 139.0 124 54.0
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.1e-30 137.5 149 47.7
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.8e-30 137.1 172 44.8
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.8e-30 136.3 152 46.7
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 8.1e-30 135.6 205 39.5
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-30 135.6 121 56.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.1e-29 135.2 153 47.1
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.4e-29 134.8 182 40.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.4e-29 134.0 152 46.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.0e-29 133.3 148 48.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.0e-29 133.3 148 48.6
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 9.0e-29 132.1 159 45.3
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.2e-28 131.7 114 54.4
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 3.4e-28 130.2 163 45.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 3.4e-28 130.2 149 44.3
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 4.5e-28 129.8 121 50.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 9.9e-28 128.6 181 43.1
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.3e-27 128.3 120 50.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-27 128.3 122 47.5
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.7e-27 127.9 122 46.7
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.4e-27 125.9 121 48.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 8.4e-27 125.6 148 45.9
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.1e-26 125.2 147 40.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 5.4e-26 122.9 109 50.5
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 7.1e-26 122.5 160 45.0
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-26 122.5 138 45.7
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-26 122.5 138 45.7
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.2e-25 121.7 140 45.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.6e-25 121.3 109 49.5
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.1e-25 120.9 155 43.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 6.0e-25 119.4 111 47.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-24 118.6 120 46.7
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-24 117.9 120 46.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.3e-24 117.5 148 42.6
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 6.7e-24 115.9 166 43.4
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-23 114.0 140 43.6
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-23 114.0 140 43.6
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-23 114.0 140 43.6
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-23 114.0 140 43.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 5.6e-23 112.8 111 47.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.6e-22 111.3 222 36.0
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-21 108.6 141 39.7
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 5.8e-20 102.8 152 42.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 7.6e-20 102.4 101 47.5
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 7.6e-20 102.4 170 37.1
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 7.6e-20 102.4 152 34.2
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.7e-19 101.3 135 38.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.2e-19 100.9 172 36.0
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 8.4e-19 99.0 99 48.5
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.6e-17 93.2 120 40.8
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 3.0e-16 90.5 101 39.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 5.7e-15 86.3 123 39.0
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 2.1e-14 84.3 127 37.0
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-13 81.6 65 58.5
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.8e-13 81.3 66 57.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 4.1e-13 80.1 66 56.1
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 5.3e-13 79.7 57 66.7
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 5.3e-13 79.7 143 35.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 6.9e-13 79.3 66 57.6
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.9e-13 79.3 102 40.2
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.0e-12 77.8 58 63.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 3.4e-12 77.0 64 57.8
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.4e-12 77.0 58 62.1
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 5.8e-12 76.3 73 49.3
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 5.8e-12 76.3 103 41.7
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.7e-11 74.7 66 47.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 3.8e-11 73.6 96 42.7
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.0e-11 73.2 65 52.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 8.4e-11 72.4 86 47.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-09 68.6 83 47.0
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.7e-09 67.4 83 43.4
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 7.9e-09 65.9 76 44.7
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 7.9e-09 65.9 76 44.7
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 1.3e-08 65.1 82 41.5
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 3.9e-08 63.5 56 55.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.1e-07 62.0 74 44.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-07 62.0 62 43.5
PRCOL_00003051 Prasinoderma coloniale HOM05D046594 ORTHO05D005201 5.7e-07 59.7 99 34.3
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 6.3e-06 56.2 52 51.9


User provided reference genes

Program Settings