Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 0.0e+00 1412.9 712 100.0
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 0.0e+00 1223.4 713 87.5
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 0.0e+00 1202.2 713 85.7
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 7.0e-301 1036.9 617 86.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 3.4e-255 885.2 725 64.1
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 9.2e-245 850.5 725 62.3
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.6e-243 844.3 723 61.7
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 7.3e-242 840.9 723 62.4
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 4.0e-240 835.1 723 61.7
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.8e-232 809.7 738 60.2
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.0e-228 794.7 724 59.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.3e-227 793.5 724 59.1
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 7.4e-226 787.7 722 58.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.8e-225 785.8 720 59.0
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.8e-225 785.8 713 58.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 8.1e-225 784.3 732 57.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.8e-224 783.1 722 58.7
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.1e-224 782.3 722 58.9
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 9.0e-224 780.8 714 58.7
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.6e-223 779.2 735 57.3
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.2e-222 776.2 733 56.6
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 8.4e-222 774.2 725 56.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.2e-221 772.3 712 57.6
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 5.5e-221 771.5 720 58.8
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 7.1e-221 771.2 721 58.4
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 7.1e-221 771.2 729 55.7
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 9.3e-221 770.8 735 56.7
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.1e-220 769.6 736 56.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.5e-220 768.8 725 58.3
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 7.9e-220 767.7 722 57.2
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.9e-220 767.7 726 58.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 7.9e-220 767.7 720 57.1
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.8e-219 766.5 720 57.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.8e-219 766.5 715 57.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-219 766.1 720 58.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 3.0e-219 765.8 726 57.6
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.9e-219 765.4 725 58.2
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.1e-219 765.0 720 57.9
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 7.4e-218 761.1 722 56.8
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.8e-217 758.4 730 57.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.1e-216 757.3 721 57.4
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.8e-216 756.5 724 57.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.9e-216 754.6 735 55.5
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.2e-215 753.8 762 53.9
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.5e-215 753.4 734 57.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.9e-214 748.4 721 57.3
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.8e-211 740.0 724 57.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.3e-211 739.6 719 55.9
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 3.9e-211 738.8 724 56.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.6e-207 726.1 722 54.4
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.2e-205 719.2 709 54.3
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 7.2e-205 718.0 719 54.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.2e-204 717.2 719 54.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 6.1e-204 714.9 732 54.6
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 5.7e-202 708.4 723 55.2
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.8e-200 703.4 714 53.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.2e-199 700.7 641 59.8
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.0e-198 697.6 750 51.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.3e-198 697.2 723 52.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.7e-196 689.5 709 52.9
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 6.1e-196 688.3 714 54.9
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 7.9e-196 688.0 703 54.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.1e-194 684.1 749 50.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.3e-194 682.6 688 54.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-192 677.6 710 52.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.4e-192 676.4 723 52.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 4.1e-192 675.6 749 50.5
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.1e-192 675.6 744 52.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 7.0e-192 674.9 740 50.8
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.2e-191 674.1 718 52.5
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-190 670.6 742 51.8
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.9e-190 669.5 709 51.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.9e-190 669.5 719 52.2
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.0e-190 668.7 739 50.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 8.5e-190 667.9 744 50.8
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.9e-189 666.8 731 51.3
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.9e-189 666.8 732 50.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.2e-189 665.6 728 51.2
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-188 663.7 724 51.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-188 663.7 737 51.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.6e-188 663.7 734 52.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.1e-188 663.3 742 51.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 4.7e-188 662.1 728 51.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 6.1e-188 661.8 738 52.0
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.3e-187 659.8 760 50.5
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.0e-187 659.4 727 50.8
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.0e-186 656.8 719 51.2
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.2e-183 647.5 730 50.5
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 5.0e-182 642.1 718 48.5
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 8.5e-182 641.3 748 50.7
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.5e-181 639.8 746 50.1
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.5e-181 639.8 735 50.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 7.2e-181 638.3 777 48.6
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.7e-180 636.3 752 50.1
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 3.6e-180 636.0 647 54.7
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.8e-179 633.6 642 55.3
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.6e-178 629.8 736 50.0
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.8e-177 626.3 716 49.3
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.5e-175 619.0 714 47.9
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.5e-173 614.0 602 55.3
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 3.2e-173 612.8 712 48.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.2e-173 612.8 634 52.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.8e-171 607.1 677 51.1
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 4.0e-171 605.9 672 50.3
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.0e-170 603.6 711 47.3
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.9e-161 572.4 651 49.6
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.3e-161 572.0 712 45.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 6.3e-161 572.0 813 44.6
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.4e-160 570.1 627 53.0
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.3e-155 553.5 708 46.2
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.5e-151 539.7 537 55.1
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.9e-145 520.0 766 41.0
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-144 517.7 530 53.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.1e-141 508.1 679 44.3
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.1e-136 491.5 664 43.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.6e-127 461.1 814 36.9
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.8e-116 423.7 755 37.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.3e-115 419.5 764 36.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 9.0e-115 418.7 729 38.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.6e-114 415.6 711 38.7
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.0e-89 335.5 873 30.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 9.4e-88 328.9 573 36.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.7e-84 317.0 573 36.0
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.8e-76 290.0 466 39.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-66 258.8 449 38.5
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.5e-64 251.1 669 30.5
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.7e-57 228.4 221 55.7
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 8.3e-44 183.0 127 70.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.9e-41 174.5 210 46.7
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.9e-41 174.5 225 42.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 2.9e-41 174.5 299 36.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.8e-39 167.9 111 72.1
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-38 166.0 128 60.2
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 4.9e-36 157.1 98 77.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.4e-30 139.0 97 63.9
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.0e-29 135.2 130 55.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.4e-29 134.4 95 66.3
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.9e-28 131.3 141 48.9
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.0e-17 96.3 100 52.0
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-16 92.8 246 35.0
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 3.6e-15 87.8 74 55.4
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 9.3e-11 73.2 176 33.5
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.9e-09 67.8 436 24.8
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.3e-08 64.7 162 30.9
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 2.8e-07 61.6 107 34.6
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 3.6e-07 61.2 92 37.0
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 6.2e-07 60.5 77 40.3
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 8.1e-07 60.1 92 34.8
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.8e-06 58.9 92 33.7
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 2.4e-06 58.5 119 31.9
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 2.4e-06 58.5 66 42.4
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 108 33.3
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 3.1e-06 58.2 77 39.0
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 6.9e-06 57.0 74 39.2
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 6.9e-06 57.0 254 26.0
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 9.0e-06 56.6 59 45.8


User provided reference genes

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