Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 5.3e-127 457.6 217 100.0
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.8e-103 379.4 205 89.3
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 6.8e-98 360.9 206 85.4
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.2e-94 350.1 206 82.0
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 4.0e-82 308.5 199 73.4
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 2.6e-81 305.8 206 70.4
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 7.5e-81 304.3 197 72.6
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 7.0e-79 297.7 197 69.0
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 6.0e-78 294.7 206 69.9
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.3e-77 292.7 206 69.4
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 3.0e-77 292.4 196 72.4
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 3.0e-77 292.4 199 71.4
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 5.0e-77 291.6 208 68.8
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.0e-77 291.6 207 66.7
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 9.5e-76 287.3 208 68.8
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 9.5e-76 287.3 199 69.8
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 9.5e-76 287.3 201 70.1
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 4.7e-75 285.0 200 67.5
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 4.7e-75 285.0 206 66.5
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 4.7e-75 285.0 206 67.0
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 6.2e-75 284.6 206 67.5
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.1e-74 283.9 200 67.5
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.8e-74 283.1 208 67.3
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.8e-74 283.1 202 68.8
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 4.0e-74 282.0 200 68.5
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 5.2e-74 281.6 218 62.4
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 5.2e-74 281.6 208 67.8
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.5e-73 280.0 208 68.3
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 2.0e-73 279.6 198 67.2
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.7e-72 276.6 186 67.7
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.7e-72 276.6 209 65.6
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 2.2e-72 276.2 202 64.9
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 4.9e-72 275.0 208 65.9
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.4e-71 273.5 198 68.7
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 3.2e-71 272.3 220 63.6
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 5.4e-71 271.6 211 64.9
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.6e-70 270.0 209 65.1
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 4.6e-70 268.5 208 63.9
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 7.8e-70 267.7 206 61.2
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-69 266.9 198 67.2
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.3e-69 266.9 196 64.3
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.7e-69 266.5 198 67.2
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 2.3e-69 266.2 210 64.3
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.5e-68 263.5 199 63.3
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.3e-68 262.3 209 66.5
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 4.3e-68 261.9 221 59.3
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 5.6e-68 261.5 196 63.8
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 9.5e-68 260.8 198 63.6
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.2e-67 260.4 221 58.8
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 3.6e-67 258.8 209 63.6
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 4.7e-67 258.5 209 61.7
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.1e-66 257.3 198 62.1
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.4e-66 256.9 198 63.1
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.4e-66 256.9 198 63.1
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 3.1e-66 255.8 182 68.1
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 4.0e-66 255.4 199 62.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.2e-66 255.0 210 59.0
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.2e-65 253.8 210 63.3
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.5e-65 253.4 199 62.8
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 3.4e-65 252.3 203 58.6
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 3.4e-65 252.3 207 62.3
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 5.8e-65 251.5 198 59.6
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 9.9e-65 250.8 202 61.9
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 9.9e-65 250.8 216 62.0
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 1.3e-64 250.4 214 57.5
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.3e-64 250.4 206 58.7
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.3e-64 250.4 212 61.3
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.2e-64 249.6 206 58.3
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 2.2e-64 249.6 216 60.2
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 2.9e-64 249.2 205 59.5
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 6.4e-64 248.1 197 62.4
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 8.4e-64 247.7 203 58.6
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.9e-63 246.5 198 61.1
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.9e-63 246.5 203 58.1
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.4e-63 246.1 201 62.7
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 3.2e-63 245.7 214 58.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 3.2e-63 245.7 165 71.5
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 5.4e-63 245.0 205 58.0
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 7.1e-63 244.6 205 58.0
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 2.1e-62 243.0 204 59.8
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 4.6e-62 241.9 197 59.4
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 4.6e-62 241.9 197 59.4
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.6e-62 241.9 197 58.9
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 4.6e-62 241.9 218 58.3
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 7.8e-62 241.1 208 57.2
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.3e-61 240.4 205 60.0
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.3e-61 239.6 199 61.3
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.1e-60 237.3 197 59.4
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 2.5e-60 236.1 210 54.8
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 5.6e-60 235.0 198 58.1
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 7.3e-60 234.6 198 58.1
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 4.7e-59 231.9 206 58.7
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 4.4e-57 225.3 199 57.8
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 9.9e-57 224.2 205 55.6
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.9e-56 222.6 176 61.9
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 3.8e-56 222.2 229 52.8
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 7.1e-55 218.0 172 63.4
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 8.1e-51 204.5 190 56.3
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 9.9e-49 197.6 175 58.3
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.7e-46 189.5 161 58.4
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 3.9e-45 185.7 210 48.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.9e-44 183.3 161 59.0
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 1.1e-42 177.6 161 56.5
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 1.1e-42 177.6 254 42.9
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.4e-42 177.2 205 47.8
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 1.2e-41 174.1 117 68.4
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 9.9e-41 171.0 152 58.6
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 3.2e-39 166.0 229 38.9
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 9.3e-39 164.5 195 45.6
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.6e-38 163.7 120 68.3
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.8e-32 142.5 161 49.1
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 1.1e-28 131.0 150 46.7
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.8e-26 123.6 122 55.7
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 5.3e-26 122.1 127 49.6
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.6e-22 110.5 127 49.6
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 8.7e-21 104.8 64 76.6
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.4e-15 87.4 58 74.1
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 6.1e-14 82.0 48 79.2
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.6e-12 76.6 156 35.3
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 3.8e-08 62.8 84 41.7
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 6.5e-08 62.0 86 36.0
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.5e-08 61.6 68 48.5
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 1.2e-06 57.8 73 37.0


User provided reference genes

Program Settings