Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017534 Sechium edule HOM05D000063 ORTHO05D050841 7.1e-78 293.9 151 100.0
Sed0005314 Sechium edule HOM05D000063 ORTHO05D004572 6.5e-31 137.9 117 69.2
ClCG01G000970 Citrullus lanatus HOM05D000063 ORTHO05D004572 8.5e-31 137.5 125 64.8
MELO3C005834.2 Cucumis melo HOM05D000063 ORTHO05D004572 1.2e-29 133.7 122 63.1
CsaV3_5G001120 Cucumis sativus L. HOM05D000063 ORTHO05D004572 3.6e-29 132.1 122 62.3
Actinidia34146 Actinidia chinensis HOM05D000063 ORTHO05D004572 3.3e-19 99.0 116 53.4
Dinv16681 Davidia involucrata HOM05D000063 ORTHO05D004572 1.3e-18 97.1 109 54.1
Rhsim03G0189900 Rhododendron simsii HOM05D000063 ORTHO05D004572 1.4e-17 93.6 118 50.8
Solyc03g025170.1 Solanum lycopersicum HOM05D000063 ORTHO05D004572 1.6e-16 90.1 117 47.9
Hma1.2p1_0227F.1_g096110 Hydrangea macrophylla HOM05D000063 ORTHO05D004572 2.6e-16 89.4 116 49.1
Sopen03g004020 Solanum pennellii HOM05D000063 ORTHO05D004572 2.6e-16 89.4 113 49.6
Actinidia20865 Actinidia chinensis HOM05D000063 ORTHO05D004572 3.5e-16 89.0 116 50.0
Dinv28398 Davidia involucrata HOM05D000063 ORTHO05D004572 7.7e-16 87.8 113 50.4
MSTRG.27093 Avicennia marina HOM05D000063 ORTHO05D004572 1.0e-15 87.4 116 48.3
CSS0037839 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D004572 1.0e-15 87.4 114 47.4
PGSC0003DMG400010121 Solanum tuberosum HOM05D000063 ORTHO05D004572 1.3e-15 87.0 115 48.7
PGSC0003DMG400029921 Solanum tuberosum HOM05D000063 ORTHO05D004572 2.2e-15 86.3 113 45.1
vmacro06640 Vaccinium macrocarpon HOM05D000063 ORTHO05D004572 2.2e-15 86.3 118 47.5
MSTRG.8472 Avicennia marina HOM05D000063 ORTHO05D004572 3.8e-15 85.5 112 47.3
Lj5g0025817 Lotus japonicus HOM05D000063 ORTHO05D004572 5.0e-15 85.1 119 47.1
Sopen06g011970 Solanum pennellii HOM05D000063 ORTHO05D004572 5.0e-15 85.1 113 45.1
CAN.G527.5 Capsicum annuum HOM05D000063 ORTHO05D004572 6.5e-15 84.7 113 46.0
DCAR_010666 Daucus carota HOM05D000063 ORTHO05D004572 6.5e-15 84.7 115 47.0
Migut.F01094 Erythranthe guttata HOM05D000063 ORTHO05D004572 1.5e-14 83.6 116 45.7
RcHm_v2.0_Chr1g0378081 Rosa chinensis HOM05D000063 ORTHO05D004572 1.5e-14 83.6 113 46.9
Nitab4.5_0000572g0020 Nicotiana tabacum HOM05D000063 ORTHO05D004572 1.9e-14 83.2 121 43.0
MD01G1206800 Malus domestica HOM05D000063 ORTHO05D004572 3.2e-14 82.4 115 47.8
Solyc06g036170.1 Solanum lycopersicum HOM05D000063 ORTHO05D004572 3.2e-14 82.4 109 45.9
MSTRG.8719 Avicennia marina HOM05D000063 ORTHO05D004572 4.2e-14 82.0 121 45.5
Cc02_g02540 Coffea canephora HOM05D000063 ORTHO05D004572 5.5e-14 81.6 116 42.2
Sed0024730 Sechium edule HOM05D000063 ORTHO05D050841 7.2e-14 81.3 50 86.0
Ca_10733_v3 Cicer arietinum L. HOM05D000063 ORTHO05D004572 1.2e-13 80.5 119 44.5
Cfa016277 Carpinus fangiana HOM05D000063 ORTHO05D004572 1.6e-13 80.1 121 45.5
Gohir.A09G042600 Gossypium hirsutum HOM05D000063 ORTHO05D004572 1.6e-13 80.1 120 41.7
MD07G1277400 Malus domestica HOM05D000063 ORTHO05D004572 1.6e-13 80.1 118 44.9
SalBow4G2114 Salvia bowleyana HOM05D000063 ORTHO05D004572 1.6e-13 80.1 129 47.3
FvH4_7g30100 Fragaria vesca HOM05D000063 ORTHO05D004572 2.7e-13 79.3 123 41.5
Manes.14G023500 Manihot esculenta HOM05D000063 ORTHO05D004572 2.7e-13 79.3 122 41.8
FAN01G1449 Fragaria x ananassa HOM05D000063 ORTHO05D004572 3.6e-13 79.0 123 41.5
FAN10G0358 Fragaria x ananassa HOM05D000063 ORTHO05D004572 3.6e-13 79.0 123 42.3
TAR636G0512 Trochodendron aralioides HOM05D000063 ORTHO05D004572 3.6e-13 79.0 112 43.8
CAN.G236.9 Capsicum annuum HOM05D000063 ORTHO05D004572 6.1e-13 78.2 121 41.3
Potri.004G078800 Populus trichocarpa HOM05D000063 ORTHO05D004572 6.1e-13 78.2 116 44.0
Thecc.03G182300 Theobroma cacao HOM05D000063 ORTHO05D004572 1.0e-12 77.4 71 53.5
CANSAT21G0914 Cannabis sativa HOM05D000063 ORTHO05D004572 1.4e-12 77.0 120 45.0
FAN06G2945 Fragaria x ananassa HOM05D000063 ORTHO05D004572 1.4e-12 77.0 123 41.5
FAN06G5047 Fragaria x ananassa HOM05D000063 ORTHO05D004572 1.4e-12 77.0 123 41.5
Peaxi162Scf00444g00001 Petunia axillaris HOM05D000063 ORTHO05D004572 1.4e-12 77.0 126 39.7
SalBow2G1091 Salvia bowleyana HOM05D000063 ORTHO05D004572 1.4e-12 77.0 116 44.8
SalBow2G2021 Salvia bowleyana HOM05D000063 ORTHO05D004572 1.4e-12 77.0 116 44.8
MSTRG.77 Avicennia marina HOM05D000063 ORTHO05D004572 1.8e-12 76.6 116 46.6
CANSAT21G2483 Cannabis sativa HOM05D000063 ORTHO05D004572 1.8e-12 76.6 120 45.0
TWI14G0769 Tripterygium wilfordii HOM05D000063 ORTHO05D004572 1.8e-12 76.6 117 41.0
TWI39G0802 Tripterygium wilfordii HOM05D000063 ORTHO05D004572 1.8e-12 76.6 119 40.3
Nitab4.5_0016470g0010 Nicotiana tabacum HOM05D000063 ORTHO05D004572 2.3e-12 76.3 82 52.4
FAN03G2405 Fragaria x ananassa HOM05D000063 ORTHO05D004572 3.0e-12 75.9 123 40.7
Gohir.D11G010800 Gossypium hirsutum HOM05D000063 ORTHO05D004572 3.0e-12 75.9 71 56.3
Gorai.007G012300 Gossypium raimondii HOM05D000063 ORTHO05D004572 3.0e-12 75.9 71 56.3
TWI23G0174 Tripterygium wilfordii HOM05D000063 ORTHO05D004572 3.0e-12 75.9 119 39.5
FAN03G2320 Fragaria x ananassa HOM05D000063 ORTHO05D004572 1.2e-11 73.9 113 43.4
TAR629G3249 Trochodendron aralioides HOM05D000063 ORTHO05D004572 1.2e-11 73.9 118 44.1
Psat6g196800 Pisum sativum HOM05D000063 ORTHO05D004572 1.5e-11 73.6 117 42.7
Duzib068G0790 Durio zibethinus HOM05D000063 ORTHO05D004572 2.0e-11 73.2 120 40.0
Gorai.006G198300 Gossypium raimondii HOM05D000063 ORTHO05D004572 2.6e-11 72.8 120 39.2
Duzib205G1487 Durio zibethinus HOM05D000063 ORTHO05D004572 3.3e-11 72.4 123 37.4
Gohir.A11G011600 Gossypium hirsutum HOM05D000063 ORTHO05D004572 3.3e-11 72.4 120 40.8
FAN10G4228 Fragaria x ananassa HOM05D000063 ORTHO05D004572 4.4e-11 72.0 123 38.2
PGR042G1919 Punica granatum HOM05D000063 ORTHO05D004572 4.4e-11 72.0 123 42.3
Sabra17G0119300 Salix brachista HOM05D000063 ORTHO05D004572 4.4e-11 72.0 116 41.4
SGA_v2.0_scaffold44G16744 Striga asiatica HOM05D000063 ORTHO05D004572 4.4e-11 72.0 118 43.2
Nn1g01592 Nelumbo nucifera HOM05D000063 ORTHO05D004572 5.7e-11 71.6 121 39.7
Atru.chr1.388 Acer truncatum HOM05D000063 ORTHO05D004572 7.5e-11 71.2 120 37.5
Cpa.g.sc107.91 Carica papaya HOM05D000063 ORTHO05D004572 7.5e-11 71.2 79 49.4
Migut.F00310 Erythranthe guttata HOM05D000063 ORTHO05D004572 7.5e-11 71.2 122 45.1
Eucgr.A02754 Eucalyptus grandis HOM05D000063 ORTHO05D004572 7.5e-11 71.2 124 37.9
Potri.017G142400 Populus trichocarpa HOM05D000063 ORTHO05D004572 9.7e-11 70.9 116 40.5
Atru.chr1.374 Acer truncatum HOM05D000063 ORTHO05D004572 1.3e-10 70.5 120 37.5
Ca_25417_v3 Cicer arietinum L. HOM05D000063 ORTHO05D004572 1.3e-10 70.5 126 40.5
Gohir.D09G176100 Gossypium hirsutum HOM05D000063 ORTHO05D004572 1.3e-10 70.5 120 38.3
Haze_00031 Corylus avellana HOM05D000063 ORTHO05D004572 1.7e-10 70.1 113 42.5
Hma1.2p1_0327F.1_g126280 Hydrangea macrophylla HOM05D000063 ORTHO05D004572 1.7e-10 70.1 118 43.2
Glyma.10G232000 Glycine max HOM05D000063 ORTHO05D004572 2.2e-10 69.7 114 42.1
DCAR_009383 Daucus carota HOM05D000063 ORTHO05D004572 2.8e-10 69.3 115 42.6
Oeu022603.1 Olea europaea HOM05D000063 ORTHO05D004572 2.8e-10 69.3 118 40.7
COL.COLO4_28017 Corchorus olitorius HOM05D000063 ORTHO05D004572 3.7e-10 68.9 120 37.5
Peaxi162Scf00848g00031 Petunia axillaris HOM05D000063 ORTHO05D004572 3.7e-10 68.9 115 39.1
Gohir.D09G043300 Gossypium hirsutum HOM05D000063 ORTHO05D004572 4.8e-10 68.6 120 37.5
Manes.06G151400 Manihot esculenta HOM05D000063 ORTHO05D004572 6.3e-10 68.2 117 39.3
Ciclev10004502m.g Citrus clementina HOM05D000063 ORTHO05D004572 1.1e-09 67.4 58 55.2
TAR375G0844 Trochodendron aralioides HOM05D000063 ORTHO05D004572 1.1e-09 67.4 115 40.9
Prupe.2G299400 Prunus persica HOM05D000063 ORTHO05D004572 1.4e-09 67.0 119 41.2
Gorai.006G050200 Gossypium raimondii HOM05D000063 ORTHO05D004572 1.8e-09 66.6 123 36.6
Lalb_Chr19g0130691 Lupinus albus HOM05D000063 ORTHO05D004572 2.4e-09 66.2 118 40.7
Medtr7g057230 Medicago truncatula HOM05D000063 ORTHO05D004572 3.1e-09 65.9 120 40.8
Nn6g33341 Nelumbo nucifera HOM05D000063 ORTHO05D004572 3.1e-09 65.9 111 42.3
Thhalv10012936m.g Eutrema salsugineum HOM05D000063 ORTHO05D004572 7.0e-09 64.7 68 44.1
Medtr4g074320 Medicago truncatula HOM05D000063 ORTHO05D004572 7.0e-09 64.7 120 40.0
Phvul.004G109900 Phaseolus vulgaris HOM05D000063 ORTHO05D004572 9.1e-09 64.3 118 41.5
THA.LOC104800264 Tarenaya hassleriana HOM05D000063 ORTHO05D004572 9.1e-09 64.3 132 31.8
THA.LOC104811965 Tarenaya hassleriana HOM05D000063 ORTHO05D004572 1.2e-08 63.9 128 32.0
Eucgr.A00772 Eucalyptus grandis HOM05D000063 ORTHO05D004572 1.6e-08 63.5 73 42.5
Psat0ss2374g0040 Pisum sativum HOM05D000063 ORTHO05D004572 2.0e-08 63.2 68 52.9
Aa31LG3G8850 Aethionema arabicum HOM05D000063 ORTHO05D004572 3.5e-08 62.4 113 35.4
CARHR265480 Cardamine hirsuta HOM05D000063 ORTHO05D004572 3.5e-08 62.4 69 44.9
Eucgr.A00769 Eucalyptus grandis HOM05D000063 ORTHO05D004572 4.5e-08 62.0 99 36.4
Ah.07g206750 Amaranthus hybridus HOM05D000063 ORTHO05D004572 5.9e-08 61.6 68 48.5
Lj2g0000847 Lotus japonicus HOM05D000063 ORTHO05D004572 5.9e-08 61.6 122 36.1
AUR62021138 Chenopodium quinoa HOM05D000063 ORTHO05D004572 7.7e-08 61.2 79 46.8
Lsat_1_v5_gn_8_6721 Lactuca sativa HOM05D000063 ORTHO05D004572 7.7e-08 61.2 120 35.0
QL09p013155 Quercus lobata HOM05D000063 ORTHO05D004572 7.7e-08 61.2 117 36.8
Glyma.20G162100 Glycine max HOM05D000063 ORTHO05D004572 1.3e-07 60.5 111 41.4
BcaB08g35603 Brassica carinata HOM05D000063 ORTHO05D004572 1.7e-07 60.1 70 40.0
AUR62031401 Chenopodium quinoa HOM05D000063 ORTHO05D004572 1.7e-07 60.1 79 46.8
TPR.G33544 Trifolium pratense HOM05D000063 ORTHO05D004572 1.7e-07 60.1 122 41.0
Medtr6g047750 Medicago truncatula HOM05D000063 ORTHO05D004572 2.9e-07 59.3 125 40.0
unitig_52.g17738 Utricularia gibba HOM05D000063 ORTHO05D004572 3.8e-07 58.9 121 41.3
VMungo0464G0397 Vigna mungo HOM05D000063 ORTHO05D004572 3.8e-07 58.9 117 36.8
EL10Ac3g05439 Beta vulgaris HOM05D000063 ORTHO05D004572 5.0e-07 58.5 75 45.3
Lsat_1_v5_gn_2_131100 Lactuca sativa HOM05D000063 ORTHO05D004572 5.0e-07 58.5 120 35.0
Sc13g0008960 Simmondsia chinensis HOM05D000063 ORTHO05D004572 5.0e-07 58.5 70 44.3
TPR.G26992 Trifolium pratense HOM05D000063 ORTHO05D004572 6.5e-07 58.2 119 41.2
Sp6g14690 Schrenkiella parvula HOM05D000063 ORTHO05D004572 8.5e-07 57.8 68 39.7
TAR629G0298 Trochodendron aralioides HOM05D000063 ORTHO05D004572 8.5e-07 57.8 87 41.4
Eucgr.A00766 Eucalyptus grandis HOM05D000063 ORTHO05D004572 1.1e-06 57.4 103 36.9
A10p10060 Brassica napus HOM05D000063 ORTHO05D004572 1.9e-06 56.6 134 30.6
BraA10t43088Z Brassica rapa HOM05D000063 ORTHO05D004572 1.9e-06 56.6 134 30.6
Phvul.007G073500 Phaseolus vulgaris HOM05D000063 ORTHO05D004572 1.9e-06 56.6 112 35.7
AL205U10020 Arabidopsis lyrata HOM05D000063 ORTHO05D004572 2.5e-06 56.2 69 42.0
THA.LOC104825108 Tarenaya hassleriana HOM05D000063 ORTHO05D004572 2.5e-06 56.2 123 30.1
BcaC04g20583 Brassica carinata HOM05D000063 ORTHO05D004572 3.2e-06 55.8 119 32.8
C09p41890 Brassica napus HOM05D000063 ORTHO05D004572 3.2e-06 55.8 119 32.8
BolC9t57075H Brassica oleracea HOM05D000063 ORTHO05D004572 3.2e-06 55.8 119 32.8
Glyma.09G133600 Glycine max HOM05D000063 ORTHO05D004572 3.2e-06 55.8 118 38.1
MBI11_g11982_MAGBIO Magnolia biondii HOM05D000063 ORTHO05D004572 7.2e-06 54.7 117 37.6


User provided reference genes

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