Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 3.3e-53 211.5 108 100.0
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 2.4e-35 152.1 107 76.6
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 5.9e-34 147.5 103 77.7
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 3.6e-31 138.3 76 86.8
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 6.1e-31 137.5 101 78.2
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 5.0e-17 91.3 109 53.2
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.1e-16 90.1 81 60.5
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.1e-16 90.1 94 54.3
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.9e-16 89.4 100 53.0
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 9.4e-16 87.0 105 47.6
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 2.1e-15 85.9 106 46.2
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 2.7e-15 85.5 90 53.3
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 2.7e-15 85.5 95 50.5
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 4.7e-15 84.7 103 49.5
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 8.0e-15 84.0 106 45.3
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 8.0e-15 84.0 72 56.9
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.0e-14 83.6 92 51.1
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.0e-14 83.6 108 44.4
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.4e-14 83.2 94 54.3
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 1.8e-14 82.8 97 50.5
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.3e-14 82.4 94 53.2
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 2.3e-14 82.4 98 50.0
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 3.0e-14 82.0 110 49.1
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 3.9e-14 81.6 90 51.1
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.2e-14 81.3 91 51.6
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 6.7e-14 80.9 90 50.0
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 8.8e-14 80.5 98 50.0
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 8.8e-14 80.5 98 50.0
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 8.8e-14 80.5 98 50.0
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 2.0e-13 79.3 98 50.0
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.6e-13 79.0 98 50.0
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 4.4e-13 78.2 90 47.8
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.3e-12 76.6 86 51.2
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.7e-12 76.3 87 47.1
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.7e-12 76.3 93 53.8
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 2.8e-12 75.5 91 49.5
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 8.2e-12 73.9 99 43.4
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.4e-11 73.2 100 45.0
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 2.4e-11 72.4 95 48.4
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 3.1e-11 72.0 91 48.4
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 7.0e-11 70.9 75 52.0
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 4.5e-10 68.2 109 44.0
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 5.9e-10 67.8 96 44.8
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 1.3e-09 66.6 103 39.8
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.3e-09 66.6 95 48.4
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.9e-09 65.5 93 43.0
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.9e-09 65.5 99 40.4
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 3.8e-09 65.1 107 44.9
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 3.8e-09 65.1 99 40.4
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 6.5e-09 64.3 102 43.1
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 6.5e-09 64.3 102 43.1
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.1e-08 63.5 98 46.9
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.1e-08 63.5 88 46.6
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 1.1e-08 63.5 74 51.4
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 1.1e-08 63.5 107 40.2
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.9e-08 62.8 113 40.7
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.5e-08 62.4 100 40.0
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.2e-08 62.0 69 49.3
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.2e-08 62.0 104 39.4
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 4.2e-08 61.6 113 40.7
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 7.2e-08 60.8 69 46.4
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.2e-07 60.1 95 40.0
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.2e-07 60.1 113 40.7
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.2e-07 60.1 104 38.5
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 1.2e-07 60.1 110 38.2
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 1.2e-07 60.1 95 44.2
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.6e-07 59.7 95 40.0
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 2.1e-07 59.3 106 38.7
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.1e-07 59.3 60 50.0
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 2.7e-07 58.9 56 53.6
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.6e-07 58.5 89 44.9
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 4.7e-07 58.2 103 38.8
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 6.1e-07 57.8 74 48.6
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 6.1e-07 57.8 57 52.6
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 6.1e-07 57.8 69 47.8
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.0e-06 57.0 53 49.1
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 1.4e-06 56.6 90 40.0
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 1.8e-06 56.2 68 45.6
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 2.3e-06 55.8 93 36.6
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.3e-06 55.8 74 48.6
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 3.0e-06 55.5 89 40.4
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 3.0e-06 55.5 67 49.3
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 4.0e-06 55.1 74 48.6
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 4.0e-06 55.1 74 48.6
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 4.0e-06 55.1 74 48.6
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 4.0e-06 55.1 110 35.5
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 5.2e-06 54.7 71 38.0
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 5.2e-06 54.7 80 46.2
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 5.2e-06 54.7 109 37.6
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 6.7e-06 54.3 88 42.0


User provided reference genes

Program Settings