Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.7e-163 578.2 294 100.0
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 5.5e-127 458.0 309 78.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 4.0e-125 451.8 300 79.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.5e-124 449.9 309 77.7
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.6e-124 449.1 298 79.9
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.0e-109 400.6 308 68.5
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.2e-108 397.1 306 68.3
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 6.3e-107 391.3 304 68.4
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.1e-106 389.0 306 66.3
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.2e-105 387.1 296 68.2
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.2e-105 387.1 298 67.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.6e-105 386.7 302 67.9
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.6e-105 386.7 302 67.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 3.5e-105 385.6 305 67.2
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.3e-104 383.6 296 68.6
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 2.9e-104 382.5 297 68.7
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.8e-104 382.1 299 67.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.8e-104 382.1 299 67.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 8.6e-104 380.9 302 67.2
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.1e-103 380.6 309 64.7
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-103 380.2 299 67.2
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-103 380.2 296 67.6
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.9e-103 379.8 311 66.6
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 3.3e-103 379.0 294 69.4
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 3.3e-103 379.0 287 69.0
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 3.3e-103 379.0 287 69.3
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 4.3e-103 378.6 344 61.3
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 5.6e-103 378.3 296 67.6
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 7.3e-103 377.9 290 68.6
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 7.3e-103 377.9 315 62.9
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.5e-103 377.5 295 68.1
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 9.5e-103 377.5 295 67.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.2e-102 377.1 307 65.5
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.2e-102 377.1 287 68.6
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.1e-102 376.3 307 63.5
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.8e-102 375.9 291 67.7
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 8.0e-102 374.4 301 66.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.0e-102 374.4 283 70.0
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.0e-101 374.0 273 69.2
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.0e-101 374.0 291 67.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.4e-101 373.6 307 65.8
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.3e-101 372.9 303 65.7
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.0e-100 369.8 302 64.6
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.6e-100 369.4 318 63.5
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.6e-100 369.4 287 67.6
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.4e-100 369.0 285 68.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.4e-100 368.6 280 68.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 4.4e-100 368.6 297 66.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.5e-100 367.9 269 68.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.2e-99 366.3 307 62.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.9e-99 365.9 302 63.9
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 8.3e-99 364.4 305 63.3
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 8.3e-99 364.4 303 63.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.4e-98 363.6 287 66.9
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.4e-98 363.6 303 63.0
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.8e-98 363.2 308 63.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.8e-98 363.2 308 63.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.8e-98 363.2 324 62.7
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.4e-98 362.8 303 64.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.1e-98 362.1 288 65.3
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.1e-98 362.1 288 65.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 4.1e-98 362.1 285 65.6
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 5.4e-98 361.7 285 65.3
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.0e-98 361.3 285 65.3
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 9.2e-98 360.9 300 63.3
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 9.2e-98 360.9 289 66.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.6e-97 360.1 303 63.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-97 358.6 265 67.9
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 4.6e-97 358.6 265 67.9
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-97 358.6 295 64.4
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.6e-97 358.6 303 64.0
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 4.6e-97 358.6 315 61.6
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.0e-96 357.5 279 67.7
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-96 357.5 293 63.5
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-96 357.5 293 63.5
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.7e-96 356.7 281 64.1
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 3.9e-96 355.5 321 60.4
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 5.0e-96 355.1 303 63.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 6.6e-96 354.8 286 66.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.5e-95 353.6 280 63.6
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.5e-95 352.8 296 63.5
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-95 352.8 280 64.3
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 2.5e-95 352.8 263 67.7
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.3e-95 352.1 303 61.4
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.3e-95 352.1 303 61.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 7.3e-95 351.3 290 64.1
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-94 350.5 265 66.4
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.1e-94 349.7 268 65.3
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 8.0e-94 347.8 299 61.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 5.2e-93 345.1 276 66.3
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 8.9e-93 344.4 291 62.9
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 8.9e-93 344.4 288 63.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 8.9e-93 344.4 281 64.4
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.0e-92 343.2 314 61.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.3e-91 340.5 285 61.1
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.2e-91 339.7 287 61.0
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.2e-91 339.7 284 62.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.7e-91 339.0 250 67.2
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.2e-90 335.9 313 59.1
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 4.1e-90 335.5 287 60.6
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.2e-89 334.0 301 60.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.2e-89 334.0 276 63.8
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 2.3e-88 329.7 297 60.9
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.1e-87 327.4 307 57.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.5e-87 327.0 285 60.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 5.6e-87 325.1 280 61.4
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 5.6e-87 325.1 310 57.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.8e-86 322.8 298 57.7
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 3.6e-86 322.4 267 62.2
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 8.9e-85 317.8 236 66.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.6e-81 307.0 272 60.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.0e-80 304.3 312 56.1
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 3.3e-79 299.3 281 57.3
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 2.3e-77 293.1 269 55.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 9.9e-76 287.7 280 56.1
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 3.8e-75 285.8 263 58.6
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.6e-73 278.9 294 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.4e-69 266.5 285 51.6
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 3.1e-69 266.2 251 54.2
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.4e-68 262.7 303 50.2
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.4e-68 262.3 254 53.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 9.9e-68 261.2 207 67.1
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.2e-67 260.0 294 48.6
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 3.8e-67 259.2 266 50.0
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 5.4e-66 255.4 176 74.4
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.2e-65 254.2 287 48.4
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-62 243.0 301 44.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.0e-61 238.0 187 66.3
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.9e-58 230.3 230 52.6
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.2e-57 227.6 157 70.7
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.6e-57 227.3 157 70.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.9e-56 222.6 157 69.4
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.6e-49 199.1 240 47.9
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-47 193.4 197 53.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.4e-45 186.8 129 73.6
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.5e-44 182.6 129 71.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.3e-42 174.9 294 38.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 6.7e-40 168.7 127 64.6
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 3.7e-38 162.9 134 65.7
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.3e-38 162.2 236 43.2
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.8e-37 160.6 295 39.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 8.7e-32 141.7 288 35.4
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.8e-29 134.0 273 35.5
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.6e-25 120.9 80 70.0
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.1e-25 120.6 169 45.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-24 117.9 105 61.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.0e-23 114.0 86 62.8
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.0e-20 104.0 97 53.6
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 5.9e-20 102.4 70 67.1
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.4e-18 97.8 199 30.7
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.2e-18 96.3 91 57.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.7e-17 92.8 142 43.7
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 5.2e-16 89.4 80 58.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-15 88.2 62 64.5
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 7.4e-15 85.5 50 78.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 4.8e-14 82.8 286 25.2
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 8.5e-11 72.0 294 23.1
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 8.8e-08 62.0 38 76.3
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 8.8e-08 62.0 38 76.3
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.0e-07 60.8 171 27.5


User provided reference genes

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