Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 7.2e-119 432.2 655 100.0
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.5e-84 318.2 214 76.2
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 4.6e-81 306.6 215 74.0
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 3.3e-55 220.7 215 56.3
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 3.6e-54 217.2 217 54.4
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.4e-53 215.3 178 61.8
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.3e-51 208.8 218 54.1
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 2.2e-51 208.0 193 56.0
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 4.9e-51 206.8 171 61.4
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.4e-51 206.1 188 55.9
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 8.4e-51 206.1 216 51.4
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 2.4e-50 204.5 188 56.4
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 5.5e-50 203.4 216 51.9
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 7.1e-50 203.0 188 54.8
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 7.1e-50 203.0 200 57.0
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 9.3e-50 202.6 191 55.5
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 4.6e-49 200.3 188 55.3
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.0e-48 199.1 215 50.7
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.3e-48 198.7 209 49.3
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.8e-48 198.4 192 51.6
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.8e-48 198.4 166 56.6
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 3.0e-48 197.6 189 53.4
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.9e-47 194.9 216 50.0
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 9.6e-47 192.6 215 47.9
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 1.3e-46 192.2 182 53.8
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.6e-46 191.8 194 51.0
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 2.1e-46 191.4 164 55.5
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 2.8e-46 191.0 218 48.6
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 2.8e-46 191.0 218 48.6
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 2.8e-46 191.0 218 48.6
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 2.8e-46 191.0 142 64.1
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 3.7e-46 190.7 223 49.3
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 4.8e-46 190.3 232 46.1
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.8e-45 188.3 189 52.9
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 4.0e-45 187.2 189 51.9
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.6e-44 184.5 188 53.2
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 1.3e-43 182.2 162 54.3
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 2.2e-43 181.4 215 47.0
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 2.2e-43 181.4 173 54.3
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 2.9e-43 181.0 200 47.5
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 6.5e-43 179.9 210 49.0
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.1e-42 179.1 220 46.4
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.9e-42 178.3 156 54.5
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 4.6e-41 173.7 160 55.0
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.0e-41 173.3 223 47.5
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 7.9e-41 172.9 193 49.7
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 7.9e-41 172.9 167 52.7
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 2.3e-40 171.4 165 54.5
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 3.0e-40 171.0 169 55.0
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 1.1e-39 169.1 220 45.0
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.9e-39 168.3 174 50.0
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 2.8e-38 164.5 156 55.1
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 2.8e-38 164.5 156 54.5
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 6.3e-38 163.3 162 54.9
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.1e-37 162.5 165 50.9
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.8e-37 161.8 179 50.3
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.8e-37 161.8 179 50.3
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 1.8e-37 161.8 160 52.5
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 4.5e-36 157.1 144 54.2
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 5.9e-36 156.8 213 43.7
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 5.9e-36 156.8 140 54.3
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 3.8e-35 154.1 164 45.7
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 6.5e-35 153.3 215 44.7
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 2.5e-34 151.4 157 50.3
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 3.2e-34 151.0 157 49.7
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 5.5e-34 150.2 230 37.8
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 2.7e-33 147.9 197 42.1
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 4.6e-33 147.1 124 57.3
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 4.6e-33 147.1 179 44.7
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 7.9e-33 146.4 187 43.3
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.3e-32 144.8 157 47.8
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.3e-32 144.8 122 57.4
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 2.5e-31 141.4 91 79.1
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 4.3e-31 140.6 155 50.3
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 4.3e-31 140.6 117 59.0
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 5.7e-31 140.2 167 44.3
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 5.7e-31 140.2 121 57.0
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.2e-30 138.3 163 46.0
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 2.8e-30 137.9 116 57.8
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 4.8e-30 137.1 195 43.1
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 4.8e-30 137.1 116 56.9
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.4e-29 135.6 159 45.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 3.1e-29 134.4 109 60.6
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 4.1e-29 134.0 208 40.4
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 2.0e-28 131.7 115 55.7
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 3.4e-28 131.0 117 54.7
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.0e-27 129.4 195 39.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.0e-27 129.4 195 39.0
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 1.7e-27 128.6 168 39.3
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 3.2e-26 124.4 86 89.5
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.2e-26 124.4 154 44.2
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.2e-26 124.0 86 89.5
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.2e-25 122.5 167 39.5
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 7.9e-25 119.8 91 78.0
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 7.9e-25 119.8 86 83.7
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.3e-24 118.2 86 87.2
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 2.6e-23 114.8 85 65.9
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 2.8e-22 111.3 167 37.7
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-21 109.4 154 40.3
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 2.4e-21 108.2 87 64.4
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.3e-19 102.4 118 48.3
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.2e-19 101.7 91 57.1
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 5.5e-18 97.1 94 47.9
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 9.4e-18 96.3 85 75.3
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 3.9e-16 90.9 86 68.6
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 9.1e-13 79.7 87 64.4
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 2.6e-12 78.2 70 54.3
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 6.5e-11 73.6 60 61.7
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 3.6e-09 67.8 54 63.0
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 6.7e-08 63.5 134 27.6
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 2.0e-07 62.0 198 27.8
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 2.6e-07 61.6 159 28.3
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.3e-07 61.2 110 35.5
Hund26048 Selenicereus undatus HOM05D007202 ORTHO05D009125 3.3e-07 61.2 95 34.7
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 7.5e-07 60.1 90 36.7
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 9.7e-07 59.7 96 33.3
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 9.7e-07 59.7 96 33.3
CDE07G1249 Ceratophyllum demersum HOM05D007128 ORTHO05D009059 1.7e-06 58.9 128 31.2
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 1.7e-06 58.9 96 33.3
COL.COLO4_24378 Corchorus olitorius HOM05D007128 ORTHO05D009059 2.8e-06 58.2 181 26.5
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 3.7e-06 57.8 126 29.4
Manes.14G160600 Manihot esculenta HOM05D007128 ORTHO05D009059 3.7e-06 57.8 71 39.4
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 3.7e-06 57.8 66 37.9
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 4.8e-06 57.4 170 27.1
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 4.8e-06 57.4 55 47.3
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 6.3e-06 57.0 77 37.7
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 6.3e-06 57.0 77 37.7
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 8.2e-06 56.6 68 36.8
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 8.2e-06 56.6 95 33.7


User provided reference genes

Program Settings