Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.1e-62 243.0 115 100.0
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.2e-54 214.5 107 94.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.2e-54 214.5 107 94.4
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.0e-52 209.9 107 92.5
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.3e-52 209.5 107 90.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.1e-51 206.5 107 89.7
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 4.3e-51 204.5 107 86.0
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 9.6e-51 203.4 107 87.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.6e-50 201.4 107 83.2
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 4.8e-50 201.1 107 86.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.8e-50 201.1 108 84.3
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.2e-50 200.7 107 84.1
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.1e-49 199.9 107 85.0
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.4e-49 199.5 107 86.0
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-49 199.5 107 85.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.4e-49 198.7 107 85.0
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.4e-49 198.7 107 86.0
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 3.1e-49 198.4 107 82.2
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.1e-49 198.4 108 87.0
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 4.0e-49 198.0 107 85.0
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.0e-49 198.0 108 86.1
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 4.0e-49 198.0 107 86.9
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 5.3e-49 197.6 107 84.1
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 5.3e-49 197.6 107 83.2
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 9.0e-49 196.8 107 84.1
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 83.2
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 83.2
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 83.2
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.2e-48 196.4 108 82.4
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 84.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.5e-48 196.1 107 81.3
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 81.3
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 85.0
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 84.1
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 85.0
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.6e-48 195.3 107 84.1
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 2.6e-48 195.3 107 83.2
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.4e-48 194.9 107 80.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 5.8e-48 194.1 107 84.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 7.6e-48 193.7 107 84.1
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 7.6e-48 193.7 107 84.1
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 7.6e-48 193.7 107 84.1
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 7.6e-48 193.7 107 84.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 83.2
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 81.3
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 82.2
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.2e-47 192.2 107 83.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.2e-47 192.2 107 81.3
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.9e-47 191.8 107 85.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.9e-47 191.8 107 78.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.8e-47 191.4 107 82.2
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.9e-47 191.0 107 81.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 4.9e-47 191.0 107 81.3
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 4.9e-47 191.0 107 80.4
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.9e-47 191.0 107 81.3
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.9e-47 191.0 107 81.3
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 6.4e-47 190.7 107 82.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 6.4e-47 190.7 107 81.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 8.4e-47 190.3 105 81.9
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 8.4e-47 190.3 107 81.3
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 8.4e-47 190.3 107 82.2
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.1e-46 189.9 107 79.4
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.1e-46 189.9 107 81.3
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.4e-46 189.5 107 80.4
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-46 189.1 107 79.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.9e-46 189.1 107 77.6
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.4e-46 188.7 107 81.3
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-46 188.7 107 81.3
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.4e-46 188.7 107 79.4
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 3.2e-46 188.3 107 79.4
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 3.2e-46 188.3 107 79.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.2e-46 188.3 107 81.3
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 4.2e-46 188.0 107 80.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.4e-46 187.6 107 81.3
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-45 186.4 107 80.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.2e-45 186.4 107 77.6
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-45 185.7 107 79.4
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.1e-45 185.7 107 79.4
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 3.5e-45 184.9 107 78.5
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 4.6e-45 184.5 107 79.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 7.9e-45 183.7 107 80.4
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-44 183.0 114 76.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-44 183.0 114 76.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.3e-44 183.0 114 76.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.3e-44 183.0 107 78.5
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.7e-44 182.6 107 78.5
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.7e-44 182.6 108 79.6
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 2.3e-44 182.2 107 78.5
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 3.9e-44 181.4 107 77.6
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 3.9e-44 181.4 107 77.6
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.6e-44 180.6 107 77.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 8.7e-44 180.3 107 76.6
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-43 179.9 107 77.6
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.5e-43 179.5 107 75.7
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-43 179.5 107 77.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.5e-43 179.5 107 77.6
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.5e-43 179.5 107 77.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.5e-43 179.5 107 77.6
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.5e-43 179.5 107 75.7
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.5e-43 179.5 95 85.3
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.9e-43 179.1 107 77.6
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.9e-43 179.1 107 77.6
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.9e-43 179.1 107 76.6
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.9e-43 179.1 107 77.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.5e-43 178.7 107 77.6
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.5e-43 178.7 107 76.6
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.5e-43 178.7 107 81.3
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 4.3e-43 177.9 107 76.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 5.6e-43 177.6 108 75.9
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 5.6e-43 177.6 107 80.4
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.3e-42 176.4 107 75.7
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.3e-42 176.4 107 75.7
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.6e-42 176.0 108 77.8
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.1e-42 175.6 107 76.6
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.1e-42 175.6 107 76.6
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 6.2e-42 174.1 107 75.7
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.1e-41 173.3 136 62.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.1e-41 171.8 107 73.8
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.0e-41 171.4 107 75.7
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 6.9e-41 170.6 108 75.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.2e-40 169.9 107 72.9
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.2e-40 169.9 107 72.0
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 9.9e-40 166.8 114 70.2
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.9e-39 165.2 107 72.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.2e-38 161.8 124 62.1
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 7.1e-38 160.6 147 56.5
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.7e-37 158.7 107 69.2
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.0e-37 157.5 75 93.3
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.9e-36 154.8 75 89.3
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 8.7e-36 153.7 75 90.7
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.5e-35 152.9 75 89.3
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.0e-31 140.2 75 84.0
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.7e-29 132.1 84 70.2
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.7e-29 132.1 79 75.9
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.0e-28 128.6 75 78.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 7.4e-27 124.0 85 62.4
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 7.4e-27 124.0 75 74.7
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.3e-26 120.9 87 65.5
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.1e-25 118.2 87 63.2
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.3e-25 117.9 81 70.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 2.9e-23 112.1 89 64.0
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.8e-23 111.7 87 56.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 6.5e-23 110.9 107 54.2
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.4e-23 110.5 75 69.3
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 9.3e-22 107.1 75 64.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 7.9e-21 104.0 85 55.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 2.8e-18 95.5 97 51.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-17 93.6 63 71.4
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 5.3e-17 91.3 72 62.5
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 3.4e-16 88.6 79 51.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 3.8e-15 85.1 48 79.2
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 5.0e-15 84.7 48 81.2
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.5e-15 84.3 43 88.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 7.7e-08 60.8 45 62.2
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 3.8e-07 58.5 42 64.3
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 7.2e-06 54.3 88 38.6


User provided reference genes

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