Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 0.0e+00 1426.8 737 100.0
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 0.0e+00 1136.7 739 81.1
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 0.0e+00 1112.1 739 79.2
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 0.0e+00 1094.3 739 78.3
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.3e-196 690.6 731 52.1
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.1e-183 646.7 755 49.7
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.2e-178 630.9 681 52.4
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 3.5e-178 629.4 687 50.9
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 5.9e-178 628.6 755 48.9
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.3e-177 627.5 754 48.9
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 1.1e-176 624.4 684 52.2
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 2.3e-174 616.7 730 49.7
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.0e-174 616.3 736 49.2
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.0e-174 615.9 725 48.1
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 3.1e-171 606.3 690 50.1
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.0e-170 603.6 741 47.9
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 5.0e-169 599.0 725 48.7
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 5.5e-168 595.5 721 48.8
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.5e-168 595.5 722 48.2
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 9.5e-168 594.7 737 47.5
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 9.5e-168 594.7 743 47.5
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.2e-165 587.8 732 46.6
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-165 587.4 722 47.5
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 5.9e-162 575.5 755 45.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.1e-160 571.2 693 47.9
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.4e-158 564.3 708 46.6
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 6.8e-158 562.0 708 46.6
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.5e-157 560.8 710 46.3
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.5e-157 560.8 755 45.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.7e-156 557.4 730 45.9
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 3.7e-156 556.2 742 44.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 8.3e-156 555.1 682 46.6
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 8.3e-156 555.1 688 46.8
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.9e-155 553.9 682 45.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.2e-154 551.2 641 48.5
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 5.6e-152 542.3 712 45.6
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-151 541.2 682 45.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 1.2e-151 541.2 773 44.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 3.1e-150 536.6 683 45.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 4.0e-150 536.2 683 44.7
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 2.9e-148 530.0 693 47.9
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 7.8e-146 521.9 683 44.8
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 9.5e-144 515.0 687 43.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 3.6e-143 513.1 749 40.9
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.2e-141 508.1 683 46.0
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 2.0e-141 507.3 745 42.0
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 5.1e-137 492.7 684 43.7
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 8.6e-137 491.9 732 43.3
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.6e-135 487.6 714 42.9
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.6e-135 486.5 746 42.5
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 4.7e-135 486.1 739 43.3
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.1e-134 485.0 762 42.1
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.2e-134 482.6 741 42.5
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 8.4e-132 475.3 755 41.7
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.1e-126 458.4 759 40.4
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 4.0e-126 456.4 754 40.8
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 4.4e-125 453.0 705 42.7
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.1e-123 448.4 759 39.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.9e-123 447.6 748 40.5
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.9e-123 447.6 771 40.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 3.2e-123 446.8 711 42.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 9.3e-123 445.3 732 41.7
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 9.3e-123 445.3 732 41.7
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 2.1e-122 444.1 756 40.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.7e-121 441.0 698 41.4
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 2.5e-120 437.2 773 40.8
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 4.8e-119 433.0 695 41.4
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 4.0e-118 429.9 680 41.5
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 4.5e-117 426.4 727 39.6
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 3.2e-115 420.2 741 39.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 2.1e-114 417.5 694 41.4
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 8.4e-108 395.6 590 42.7
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 5.1e-105 386.3 675 40.6
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.2e-98 365.2 303 63.7
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.8e-97 361.3 540 42.2
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.9e-94 349.4 688 37.8
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 5.9e-93 346.3 753 35.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 2.9e-92 344.0 335 57.0
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.3e-89 334.3 386 51.0
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.5e-80 305.1 391 47.3
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 9.1e-78 295.8 241 64.3
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 7.7e-77 292.7 363 46.8
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.0e-73 282.3 545 36.9
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 5.2e-73 280.0 297 51.2
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 4.5e-69 266.9 272 53.3
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 5.0e-52 210.3 254 47.6
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 9.5e-51 206.1 346 37.9
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.7e-45 188.0 156 66.0
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 4.6e-45 187.2 158 63.3
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.9e-39 167.9 157 57.3
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 3.2e-30 137.9 191 44.0
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 2.1e-29 135.2 100 68.0
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 3.9e-28 131.0 326 32.8
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.7e-23 115.5 187 39.0
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 6.6e-20 103.6 72 75.0
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.1e-17 94.7 80 60.0
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 8.9e-17 93.2 85 51.8
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.4e-09 69.3 101 42.6
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.5e-08 65.9 243 26.3


User provided reference genes

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