Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 3.1e-190 668.3 344 100.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.1e-122 443.0 350 68.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.8e-121 439.9 372 66.4
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.1e-118 430.6 350 66.9
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 4.6e-24 116.3 388 30.2
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.0e-23 113.6 112 58.0
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 8.7e-23 112.1 366 32.2
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.6e-21 107.8 352 30.4
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 8.1e-21 105.5 364 29.9
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 5.8e-19 99.4 217 37.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 7.6e-19 99.0 219 37.9
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.9e-18 96.3 480 26.7
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.9e-18 96.3 468 27.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 8.4e-18 95.5 407 27.8
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.9e-17 94.4 123 48.8
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.2e-17 93.6 601 24.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.2e-17 93.2 449 26.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.2e-16 91.7 87 58.6
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.6e-16 91.3 217 34.6
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.1e-16 90.9 128 46.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.1e-16 90.9 140 42.9
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 3.5e-16 90.1 136 44.1
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 7.9e-16 89.0 218 33.9
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.3e-15 87.4 204 35.3
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.9e-15 86.7 476 25.4
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.1e-15 86.3 132 42.4
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.1e-15 86.3 171 38.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.1e-15 86.3 128 43.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.1e-15 86.3 192 37.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 6.7e-15 85.9 123 46.3
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 6.7e-15 85.9 543 24.5
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 8.7e-15 85.5 230 33.5
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 8.7e-15 85.5 120 42.5
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.7e-15 85.5 123 46.3
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-14 85.1 526 24.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-14 85.1 122 45.1
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.5e-14 84.7 499 24.8
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.5e-14 84.7 124 43.5
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.9e-14 84.3 202 34.7
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.5e-14 84.0 122 45.9
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 3.3e-14 83.6 272 33.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.3e-14 83.6 203 33.0
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.3e-14 83.6 124 43.5
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 4.3e-14 83.2 478 26.4
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.3e-14 83.2 475 26.1
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-14 82.8 128 42.2
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 5.6e-14 82.8 451 27.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-13 81.6 128 41.4
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.3e-13 81.6 121 44.6
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-13 81.3 233 33.5
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-13 81.3 233 33.5
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.1e-13 80.9 176 35.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.8e-13 80.5 424 27.1
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 2.8e-13 80.5 475 25.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.7e-13 80.1 344 26.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.2e-13 79.3 128 41.4
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 6.2e-13 79.3 505 24.2
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 6.2e-13 79.3 106 47.2
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.1e-13 79.0 473 25.6
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.1e-12 78.6 172 36.6
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.1e-12 78.6 202 34.2
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.4e-12 78.2 139 40.3
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.8e-12 77.8 304 28.9
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.4e-12 77.4 124 41.1
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.1e-12 77.0 152 38.8
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 4.0e-12 76.6 215 33.0
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.0e-12 76.6 192 35.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 5.3e-12 76.3 128 40.6
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.2e-11 75.1 184 33.2
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.5e-11 74.7 123 39.8
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 2.6e-11 73.9 559 24.2
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.5e-11 73.2 155 36.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.5e-11 73.2 241 29.9
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 5.8e-11 72.8 118 41.5
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.0e-10 72.0 298 27.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.0e-10 72.0 222 30.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.7e-10 71.2 203 32.0
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.7e-10 71.2 203 32.0
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.7e-10 71.2 203 32.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.7e-10 71.2 129 34.9
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.2e-10 70.9 195 30.8
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.9e-10 70.5 208 31.2
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.9e-10 70.5 223 31.4
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 4.9e-10 69.7 567 23.6
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.9e-10 69.7 533 25.5
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.5e-10 69.3 125 38.4
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 8.4e-10 68.9 106 40.6
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-09 68.2 126 37.3
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.4e-09 68.2 127 39.4
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.2e-09 67.0 179 31.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 4.2e-09 66.6 126 38.1
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.5e-09 66.2 205 33.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 7.1e-09 65.9 203 31.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 7.1e-09 65.9 268 28.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 9.3e-09 65.5 123 36.6
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.6e-08 64.7 112 39.3
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 2.1e-08 64.3 249 29.7
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.7e-08 63.9 103 44.7
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 3.5e-08 63.5 260 28.1
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.0e-07 62.0 126 37.3
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.3e-07 61.6 119 38.7
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.3e-07 61.6 272 27.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 1.8e-07 61.2 400 26.5
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.8e-07 61.2 126 39.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.3e-07 60.8 178 30.3
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.3e-07 60.8 75 49.3
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 6.7e-07 59.3 126 34.9
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 8.7e-07 58.9 52 59.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.5e-06 58.2 242 29.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.5e-06 58.2 90 42.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 4.3e-06 56.6 154 33.8
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.3e-06 56.6 320 23.4
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.7e-06 56.2 209 30.6
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 7.4e-06 55.8 124 34.7


User provided reference genes

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