Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.5e-217 759.2 386 100.0
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.1e-194 683.3 386 88.3
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 2.7e-190 668.7 386 86.0
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 9.0e-170 600.5 386 80.8
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.2e-166 590.1 380 75.8
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.3e-165 586.6 386 74.4
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.3e-165 586.6 379 75.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 8.7e-165 583.9 386 75.1
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.9e-164 582.8 385 73.5
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.9e-164 582.8 385 73.5
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.5e-164 582.4 386 73.6
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 9.7e-164 580.5 386 74.6
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 9.7e-164 580.5 386 73.1
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.8e-163 578.9 386 74.6
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.4e-162 575.9 386 74.6
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 6.9e-162 574.3 386 73.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 9.1e-162 573.9 384 73.7
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 1.5e-161 573.2 386 72.0
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 3.4e-161 572.0 386 73.3
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 3.4e-161 572.0 386 72.5
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.0e-160 570.5 386 72.3
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.0e-160 570.5 385 71.2
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 2.2e-160 569.3 378 73.8
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 2.2e-160 569.3 379 75.5
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 5.0e-160 568.2 386 72.5
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.1e-159 567.0 381 72.7
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 4.2e-159 565.1 381 73.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 4.2e-159 565.1 386 70.2
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 9.4e-159 563.9 386 73.1
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 4.6e-158 561.6 386 72.5
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 4.6e-158 561.6 385 71.9
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 1.8e-157 559.7 385 71.4
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.8e-157 559.7 384 72.9
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 3.0e-157 558.9 382 71.7
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 3.9e-157 558.5 386 71.8
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.9e-157 558.5 386 71.5
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 5.1e-157 558.1 385 71.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 5.1e-157 558.1 384 70.6
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.5e-156 556.6 381 71.7
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.5e-156 556.6 384 70.8
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.5e-156 556.6 386 71.2
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 3.3e-156 555.4 386 71.0
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 5.7e-156 554.7 402 69.4
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 9.7e-156 553.9 385 71.4
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 9.7e-156 553.9 387 71.8
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 9.7e-156 553.9 385 71.2
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 9.7e-156 553.9 385 71.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.3e-155 553.5 388 69.8
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.2e-155 552.7 384 70.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.1e-154 550.4 380 70.3
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.4e-154 550.1 394 68.8
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 4.1e-154 548.5 393 69.0
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.1e-154 548.5 395 69.1
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 6.9e-154 547.7 386 70.2
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 9.1e-154 547.4 385 70.9
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.7e-152 543.1 385 69.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 5.0e-152 541.6 383 69.5
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 5.0e-152 541.6 386 68.4
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 8.5e-152 540.8 379 67.8
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 5.5e-151 538.1 384 68.2
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 7.2e-151 537.7 380 67.1
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 9.4e-151 537.3 382 68.1
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 9.4e-151 537.3 384 68.8
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 4.7e-150 535.0 384 67.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 7.9e-150 534.3 378 67.2
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 7.9e-150 534.3 518 56.6
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 7.9e-150 534.3 385 70.6
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.8e-149 533.1 378 67.2
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 5.2e-149 531.6 384 68.0
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.5e-148 530.0 381 66.7
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.5e-148 530.0 381 66.7
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.0e-148 529.6 383 68.7
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.7e-148 528.1 384 67.2
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 2.2e-147 526.2 381 65.6
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.1e-146 523.9 386 68.1
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 1.8e-146 523.1 385 64.9
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.0e-145 519.6 390 67.2
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.9e-145 518.1 382 70.4
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.0e-144 517.3 356 69.7
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.0e-144 517.3 383 67.6
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.0e-144 517.3 390 64.1
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 5.2e-141 505.0 384 64.6
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 6.7e-141 504.6 382 64.9
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.2e-139 499.6 384 61.7
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 6.3e-139 498.0 347 70.0
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.8e-138 496.5 385 62.6
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.8e-138 496.5 426 61.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.5e-137 492.3 353 69.7
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.8e-136 488.8 376 64.6
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 5.0e-136 488.4 384 64.3
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.5e-135 486.9 379 63.9
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 9.4e-135 484.2 380 62.6
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 9.4e-135 484.2 383 64.5
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 1.6e-134 483.4 385 64.9
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.7e-134 481.9 385 61.0
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 8.0e-134 481.1 310 76.8
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 3.5e-129 465.7 318 72.0
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.8e-124 447.6 292 74.3
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.7e-121 439.5 292 73.3
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-119 434.1 308 70.1
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.6e-118 430.3 312 70.5
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 6.1e-118 428.3 332 67.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 5.4e-114 415.2 383 58.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.0e-113 411.8 381 53.0
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.9e-111 406.8 380 53.4
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 4.4e-108 395.6 264 73.1
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.7e-105 386.3 404 48.8
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.0e-104 382.1 381 56.7
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.5e-103 380.6 381 50.7
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.3e-103 379.4 380 50.0
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 1.7e-99 367.1 266 66.5
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.9e-98 363.6 234 74.4
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 5.6e-87 325.5 271 61.3
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-82 311.2 235 67.7
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 2.6e-68 263.5 222 58.1
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 6.5e-59 232.3 148 75.0
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 3.5e-57 226.5 431 36.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.5e-55 221.1 392 36.0
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.4e-53 214.5 424 36.1
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 6.5e-51 205.7 153 68.0
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 9.1e-45 185.3 152 61.2
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.6e-41 174.5 116 73.3
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 3.1e-37 160.2 110 64.5
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.5e-28 130.2 184 40.2
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 5.7e-23 112.8 66 80.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 5.3e-21 106.3 138 42.8
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.9e-19 100.5 150 42.0
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 9.4e-18 95.5 147 42.2
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.6e-17 94.7 68 67.6
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.8e-16 91.3 101 49.5
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 7.0e-13 79.3 111 39.6
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-11 75.5 74 47.3
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.1e-10 72.0 36 94.4
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 3.3e-10 70.5 70 47.1
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.4e-08 65.1 36 86.1
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 3.4e-07 60.5 111 37.8


User provided reference genes

Program Settings