Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.0e-148 530.0 267 100.0
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 3.5e-128 461.8 267 86.9
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.0e-127 460.3 267 87.6
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.3e-127 459.9 267 86.1
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 2.8e-77 292.7 267 64.4
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 2.3e-71 273.1 289 54.7
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 8.7e-71 271.2 295 56.3
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 2.5e-70 269.6 285 57.9
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 6.2e-69 265.0 288 55.6
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.4e-68 263.8 285 55.1
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 4.5e-67 258.8 289 54.7
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 2.2e-66 256.5 270 56.3
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 3.8e-66 255.8 295 52.5
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 4.9e-66 255.4 277 53.8
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 4.9e-66 255.4 271 56.5
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 3.3e-62 242.7 282 52.5
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 2.1e-61 240.0 269 52.8
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 4.8e-61 238.8 268 50.7
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 6.2e-61 238.4 289 51.6
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.1e-60 237.7 289 51.6
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 6.9e-60 235.0 289 50.9
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.5e-59 233.8 283 50.5
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.0e-58 231.1 297 52.5
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 1.0e-58 231.1 293 51.5
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 3.8e-58 229.2 264 53.0
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 4.9e-58 228.8 295 48.8
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 8.4e-58 228.0 288 51.0
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.1e-57 227.6 274 53.3
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 4.2e-57 225.7 291 48.8
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 1.6e-56 223.8 270 50.7
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 1.6e-56 223.8 286 47.6
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 7.9e-56 221.5 232 55.6
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 1.3e-55 220.7 274 51.8
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 5.7e-54 215.3 278 51.1
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 9.6e-54 214.5 280 49.3
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 1.3e-53 214.2 280 47.9
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 2.8e-53 213.0 283 48.1
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 4.8e-53 212.2 283 50.5
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 6.3e-53 211.8 270 51.1
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 1.4e-52 210.7 255 49.8
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 1.8e-52 210.3 281 48.0
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.4e-52 209.9 191 61.8
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.4e-52 209.9 191 61.8
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 6.9e-52 208.4 268 51.5
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 1.5e-51 207.2 253 53.0
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 3.4e-51 206.1 239 56.5
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 7.6e-51 204.9 278 47.8
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.0e-50 204.5 278 48.2
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 1.0e-50 204.5 263 47.9
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 3.9e-47 192.6 263 47.1
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 6.7e-47 191.8 274 48.9
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 2.5e-46 189.9 264 47.7
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.3e-46 189.5 262 48.5
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 9.7e-46 188.0 267 47.6
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 1.3e-45 187.6 278 47.1
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 4.8e-45 185.7 288 46.5
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 8.2e-45 184.9 287 47.7
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 8.2e-45 184.9 281 44.8
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 5.9e-43 178.7 262 46.9
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 5.9e-43 178.7 194 57.2
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 7.7e-43 178.3 270 47.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.0e-42 177.9 259 47.1
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 1.0e-42 177.9 304 43.8
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 2.9e-42 176.4 331 43.5
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 3.8e-42 176.0 268 42.9
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.1e-41 174.5 285 44.2
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.1e-41 174.5 285 44.2
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 1.9e-41 173.7 284 44.4
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 1.9e-41 173.7 284 44.4
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.9e-41 173.7 323 43.3
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.2e-41 172.6 324 42.0
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 5.5e-41 172.2 271 45.0
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.2e-40 171.0 225 48.4
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 1.2e-40 171.0 322 42.9
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.4e-39 167.5 262 43.1
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 5.1e-39 165.6 267 44.6
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 6.7e-39 165.2 259 44.4
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.1e-38 164.5 273 44.0
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.0e-38 163.7 244 48.0
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 2.8e-37 159.8 243 46.5
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.8e-37 159.8 235 46.8
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 6.3e-37 158.7 195 50.3
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.8e-36 157.1 307 43.0
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.1e-36 156.0 308 42.2
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 5.3e-36 155.6 284 43.0
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 5.3e-36 155.6 226 53.1
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 2.0e-35 153.7 224 46.0
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.5e-35 152.5 290 43.8
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 1.3e-34 151.0 275 42.5
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 3.8e-34 149.4 321 38.3
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.4e-33 147.5 335 36.1
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.6e-32 144.1 215 44.2
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 7.4e-30 135.2 199 44.2
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 7.4e-30 135.2 199 44.2
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 9.7e-30 134.8 309 37.2
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 4.8e-29 132.5 194 42.8
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.6e-27 127.5 158 50.6
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 7.7e-27 125.2 207 41.5
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 2.0e-22 110.5 135 51.1
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 2.8e-21 106.7 180 42.2
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 1.2e-16 91.3 123 47.2
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.5e-11 73.2 92 50.0
SEGI_13333 Sequoiadendron giganteum HOM05D007298 ORTHO05D009226 6.1e-08 62.4 152 36.2
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 5.2e-07 59.3 60 53.3
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 5.2e-07 59.3 60 53.3
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 5.2e-07 59.3 60 53.3
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 5.7e-06 55.8 86 45.3
C01p22270 Brassica napus HOM05D007298 ORTHO05D009226 9.8e-06 55.1 118 40.7


User provided reference genes

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