Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 8.7e-173 610.1 294 100.0
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 8.9e-93 344.4 356 56.5
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.4e-85 320.5 357 54.1
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.1e-79 300.8 342 53.2
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.9e-79 300.1 354 53.7
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 3.2e-34 149.8 352 34.9
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 4.3e-31 139.4 351 35.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 5.7e-31 139.0 364 34.1
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.3e-30 137.9 355 34.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.8e-30 136.0 152 52.0
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.1e-29 134.8 149 53.0
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.9e-29 132.1 344 35.2
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.2e-28 131.3 365 33.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.0e-28 130.6 357 33.9
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 3.4e-28 129.8 175 45.7
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.5e-28 129.4 156 48.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.3e-27 127.9 325 33.5
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.3e-27 127.9 367 32.7
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.8e-27 126.3 168 47.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 3.8e-27 126.3 358 30.4
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.8e-27 126.3 382 31.2
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 3.8e-27 126.3 154 48.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.8e-27 126.3 303 35.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 6.5e-27 125.6 147 50.3
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 8.5e-27 125.2 155 47.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.2e-26 122.9 155 49.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 5.5e-26 122.5 363 32.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 9.4e-26 121.7 155 48.4
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.2e-25 121.3 145 48.3
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.6e-25 120.9 368 31.0
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 2.7e-25 120.2 367 30.5
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 6.1e-25 119.0 343 30.9
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.0e-24 118.2 291 35.1
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.4e-24 117.9 361 28.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.4e-24 117.9 315 33.0
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 2.3e-24 117.1 292 34.6
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.3e-24 117.1 305 32.8
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.3e-24 117.1 305 32.8
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.0e-24 116.7 340 31.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.0e-24 116.7 339 32.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.9e-24 116.3 142 47.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.9e-24 116.3 343 31.5
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 7.4e-23 112.1 347 32.3
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 9.7e-23 111.7 363 30.6
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.3e-22 111.3 153 45.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.3e-22 111.3 305 32.5
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.2e-22 110.5 300 33.7
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.8e-22 110.2 207 37.2
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 4.8e-22 109.4 341 30.8
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.8e-22 109.4 118 50.8
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 8.2e-22 108.6 154 43.5
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-21 108.2 180 42.8
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-21 108.2 180 42.8
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.4e-21 107.1 369 27.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.4e-21 107.1 137 45.3
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.1e-21 106.7 299 32.8
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.9e-21 105.5 293 33.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-20 104.8 344 32.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.5e-20 104.4 187 36.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.0e-20 104.0 118 50.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-20 104.0 171 39.8
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-20 104.0 312 31.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-20 104.0 312 31.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.0e-20 104.0 312 31.4
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.0e-20 104.0 129 48.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.0e-20 104.0 158 41.1
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.6e-20 103.6 291 32.3
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-20 103.2 293 32.4
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-20 103.2 161 42.2
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 3.4e-20 103.2 161 42.2
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.4e-20 103.2 302 32.8
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.4e-20 103.2 331 30.5
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.4e-20 103.2 327 32.1
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.5e-20 102.8 135 45.2
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 5.9e-20 102.4 300 33.0
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 7.7e-20 102.1 186 38.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 7.7e-20 102.1 193 38.3
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-19 101.3 300 32.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.3e-19 101.3 125 44.0
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.7e-19 100.9 313 31.3
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-19 100.5 121 47.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.2e-19 100.5 126 46.0
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.9e-19 100.1 119 49.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 5.0e-19 99.4 325 29.5
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 5.0e-19 99.4 313 31.3
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.1e-18 98.2 298 31.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-18 97.8 276 33.3
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.9e-18 97.4 311 31.8
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.9e-18 97.4 154 39.6
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 4.2e-18 96.3 199 34.7
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.5e-18 95.9 177 39.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.5e-18 95.9 177 39.5
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.2e-18 95.5 121 47.9
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 7.2e-18 95.5 138 41.3
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 7.2e-18 95.5 302 31.5
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 9.4e-18 95.1 121 45.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-17 94.7 123 45.5
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.6e-17 94.4 91 52.7
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.6e-17 94.4 198 35.9
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.1e-17 94.0 296 31.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.1e-17 94.0 121 45.5
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.7e-17 93.6 97 51.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 2.7e-17 93.6 123 43.9
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.6e-17 93.2 149 36.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.1e-17 92.4 190 34.7
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.0e-16 91.7 296 31.4
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.4e-16 91.3 131 41.2
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.4e-16 91.3 91 50.5
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.3e-16 90.5 140 40.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.0e-16 90.1 300 32.3
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 3.0e-16 90.1 282 28.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.0e-16 90.1 189 32.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.9e-16 89.7 151 39.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 5.2e-16 89.4 304 29.9
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.8e-16 88.6 121 42.1
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.0e-15 87.4 119 45.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.6e-15 87.0 129 41.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 7.4e-15 85.5 108 43.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 9.7e-15 85.1 269 29.4
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.3e-14 84.7 140 37.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.7e-14 84.3 121 43.8
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.8e-14 83.6 156 39.1
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.6e-12 77.8 129 36.4
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.5e-12 76.3 299 30.4
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.0e-11 72.8 248 30.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.2e-10 69.7 89 41.6
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 8.0e-09 65.5 105 35.2
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.2e-07 61.6 43 67.4
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 3.3e-07 60.1 116 35.3
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 5.7e-07 59.3 74 45.9
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 2.2e-06 57.4 89 37.1
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 6.3e-06 55.8 51 52.9


User provided reference genes

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