Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 2040.0 1046 100.0
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 0.0e+00 1837.0 1063 89.5
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 0.0e+00 1828.1 1063 88.2
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 0.0e+00 1824.7 1063 88.5
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1790.8 1068 86.1
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 0.0e+00 1428.3 1049 70.1
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1406.3 1077 67.6
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1397.9 1057 69.2
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1397.5 1059 68.6
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 0.0e+00 1392.9 1050 68.9
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1391.3 1059 68.3
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1365.9 1122 64.9
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 0.0e+00 1360.1 1063 66.9
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 0.0e+00 1352.4 1140 63.3
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 0.0e+00 1348.2 1081 65.6
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1339.3 1056 66.0
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1333.5 1047 66.5
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 0.0e+00 1330.9 1067 64.6
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1329.3 1123 63.2
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 0.0e+00 1328.9 1053 65.8
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 0.0e+00 1328.9 1073 64.4
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 0.0e+00 1327.4 1066 65.9
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1327.0 1047 66.1
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1322.0 1060 64.9
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 0.0e+00 1322.0 1048 66.0
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1320.1 1047 65.6
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1318.9 1071 65.1
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1318.1 1060 64.8
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1315.1 1055 66.2
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 0.0e+00 1315.1 1052 64.4
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1314.3 1069 64.8
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1314.3 1055 65.4
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1313.9 1054 66.6
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1313.5 1065 64.8
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1312.7 1069 64.8
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1312.4 1062 65.0
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1311.6 1055 65.6
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 0.0e+00 1307.4 1047 65.5
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 0.0e+00 1307.4 1067 63.3
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 0.0e+00 1307.0 1048 65.3
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1305.4 1055 65.3
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 0.0e+00 1302.7 1062 63.4
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 0.0e+00 1296.6 1095 62.8
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1294.3 1050 64.4
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 0.0e+00 1291.2 1066 62.9
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1281.5 1048 63.2
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1278.1 1053 63.5
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 0.0e+00 1275.4 1071 62.3
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 0.0e+00 1275.4 1062 63.9
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 0.0e+00 1273.8 1038 64.7
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 0.0e+00 1272.7 1071 62.1
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 0.0e+00 1271.5 1070 62.1
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1271.5 1066 61.5
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1270.8 1065 62.3
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 0.0e+00 1269.6 1096 61.1
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 0.0e+00 1269.2 1072 63.2
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 0.0e+00 1267.7 1053 62.0
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1267.7 1065 61.2
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 0.0e+00 1266.9 1059 63.3
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1266.5 1065 62.2
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1265.8 1068 63.0
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1260.4 1058 62.2
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1258.0 1058 62.1
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1257.7 1045 64.4
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1244.6 1052 63.1
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1244.2 1063 62.8
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1244.2 1059 61.9
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1243.4 1059 61.7
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1241.5 1063 61.4
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1240.7 1059 61.5
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 0.0e+00 1234.6 1187 57.0
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1229.2 1064 61.1
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1225.3 1051 61.3
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 0.0e+00 1220.7 1061 60.3
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1216.8 1059 61.6
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 0.0e+00 1215.7 1074 60.5
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1215.3 1061 59.7
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1213.4 1068 59.6
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1213.0 1073 59.5
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1209.1 1058 61.6
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1207.6 1061 60.4
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1207.6 1053 59.4
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 0.0e+00 1207.2 1058 60.3
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1206.0 1068 59.5
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1202.6 1012 60.8
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1202.2 1012 60.9
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 0.0e+00 1199.1 1056 61.2
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 0.0e+00 1196.0 1054 59.4
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 0.0e+00 1194.5 1157 56.8
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1186.8 1058 60.4
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 0.0e+00 1182.2 1064 60.6
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 0.0e+00 1180.6 1077 58.7
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1176.8 1057 60.0
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 0.0e+00 1176.4 1049 60.9
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1174.8 1061 59.1
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 0.0e+00 1170.6 1002 61.2
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 0.0e+00 1164.4 1081 58.2
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1159.1 1072 58.1
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 0.0e+00 1149.0 1050 59.3
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1122.1 988 60.4
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 0.0e+00 1105.1 952 62.4
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1104.0 1004 58.4
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 0.0e+00 1091.3 1088 53.4
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 0.0e+00 1089.3 1079 55.3
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 5.4e-310 1067.8 936 60.8
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 1.9e-294 1016.1 989 55.6
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 1.2e-293 1013.4 1067 51.6
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 6.6e-292 1007.7 909 59.4
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 7.3e-291 1004.2 1001 53.2
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 5.8e-288 994.6 1091 50.6
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 6.5e-279 964.5 1139 47.8
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 4.8e-274 948.3 886 56.7
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 4.8e-274 948.3 1074 48.8
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 5.0e-271 938.3 1080 48.6
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 3.3e-267 925.6 706 67.3
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 3.7e-266 922.2 739 66.0
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 8.2e-266 921.0 1020 49.8
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 2.9e-263 912.5 693 67.4
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 7.5e-235 818.1 1064 46.3
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.4e-233 812.0 973 46.4
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.9e-230 803.5 931 49.1
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 2.3e-212 743.4 1135 40.0
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.1e-206 724.5 997 43.5
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.4e-196 691.0 1088 38.4
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 2.6e-195 686.8 570 62.1
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 6.0e-192 675.6 1137 38.2
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 9.0e-180 635.2 467 71.3
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 3.8e-178 629.8 1048 38.5
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 9.0e-172 608.6 462 70.3
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.1e-148 530.4 659 44.6
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 5.3e-132 476.5 365 71.2
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.2e-118 432.2 464 51.3
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.3e-114 418.7 733 35.6
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.7e-114 418.3 489 48.1
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.5e-113 414.5 396 55.3
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 3.0e-111 407.5 319 71.2
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-90 336.7 759 32.5
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 1.7e-82 312.0 333 52.0
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 5.1e-82 310.5 995 27.2
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-57 229.2 350 36.3
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 1.2e-54 219.5 158 67.1
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.8e-54 217.2 373 35.9
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 1.3e-53 216.1 1012 23.4
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 3.2e-52 211.5 205 52.2
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 1.2e-51 209.5 332 39.5
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 1.5e-49 202.6 161 61.5
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.5e-49 201.8 288 37.2
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 9.6e-49 199.9 161 60.9
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 1.5e-46 192.6 122 73.8
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 1.4e-44 186.0 995 22.6
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 2.1e-43 182.2 1256 21.4
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 4.8e-40 171.0 298 37.2
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 1.2e-38 166.4 149 55.7
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 1.0e-37 163.3 157 56.7
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.2e-37 162.2 164 45.1
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-37 161.8 284 32.4
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.3e-36 156.8 155 44.5
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.7e-35 155.2 185 42.2
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 6.7e-34 150.6 228 34.6
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-33 149.8 136 48.5
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.8e-31 142.5 154 42.9
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-30 138.7 149 42.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.5e-30 137.9 134 47.0
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 5.0e-29 134.4 115 60.9
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 7.9e-27 127.1 182 44.5
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.0e-26 126.7 122 47.5
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.7e-25 120.9 128 48.4
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 6.3e-24 117.5 94 59.6
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 1.4e-23 116.3 125 42.4
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 9.1e-23 113.6 65 80.0
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.7e-22 110.5 156 37.2
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 4.2e-20 104.8 163 36.2
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-18 99.8 132 37.1
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.3e-18 99.0 123 37.4
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-17 96.7 103 40.8
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-16 93.2 95 45.3
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-16 92.0 95 42.1
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 4.1e-15 88.2 97 45.4
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-13 82.8 74 48.6
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 5.5e-12 77.8 66 53.0
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 1.8e-10 72.8 49 75.5
Medtr1g492720 Medicago truncatula HOM05D003580 ORTHO05D004441 1.8e-07 62.8 60 55.0


User provided reference genes

Program Settings