Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 1.7e-258 896.0 638 100.0
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 3.3e-193 679.1 645 84.7
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 6.2e-192 674.9 628 87.1
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 7.6e-190 667.9 655 70.5
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 1.2e-174 617.5 641 72.2
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 1.0e-130 471.5 658 70.5
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 7.3e-116 422.2 658 66.7
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 1.8e-114 417.5 658 62.0
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 2.3e-109 400.6 655 65.6
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 4.3e-108 396.4 660 65.2
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 1.2e-107 394.8 654 65.1
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 1.2e-107 394.8 646 64.7
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 4.4e-105 386.3 650 64.9
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 4.1e-103 379.8 660 63.2
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 1.6e-102 377.9 651 64.1
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.7e-101 374.4 650 63.2
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 8.6e-101 372.1 652 64.0
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.2e-99 368.2 655 64.0
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 6.2e-99 365.9 648 62.7
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 1.7e-96 357.8 651 62.7
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 3.8e-96 356.7 655 62.9
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 4.9e-96 356.3 652 62.4
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.1e-95 355.1 645 63.9
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 7.1e-95 352.4 651 63.0
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.2e-94 351.7 654 61.2
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 3.0e-93 347.1 667 48.7
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 3.9e-93 346.7 648 61.7
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 1.1e-92 345.1 667 52.2
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 9.6e-92 342.0 680 51.0
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 9.6e-92 342.0 651 54.2
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 1.6e-91 341.3 658 42.1
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 2.0e-89 334.3 646 56.7
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 2.4e-87 327.4 647 60.3
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 9.3e-87 325.5 657 60.7
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 3.5e-86 323.6 642 61.5
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 4.6e-86 323.2 656 61.3
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 6.0e-86 322.8 649 60.9
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 7.8e-86 322.4 652 60.7
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 1.0e-85 322.0 651 58.8
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 5.1e-85 319.7 647 61.1
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 1.5e-84 318.2 653 60.0
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 1.9e-84 317.8 643 56.9
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 4.3e-84 316.6 647 60.4
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 1.1e-82 312.0 648 56.0
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 2.4e-82 310.8 655 60.3
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 3.1e-82 310.5 649 58.2
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 1.2e-81 308.5 655 49.2
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 2.0e-81 307.8 652 60.1
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.5e-81 306.6 649 59.9
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.3e-80 305.1 657 59.1
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.7e-80 304.7 652 58.7
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 4.9e-80 303.1 663 58.1
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 1.4e-79 301.6 666 58.1
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 4.2e-79 300.1 653 49.0
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 7.1e-79 299.3 627 58.9
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 2.3e-77 294.3 680 36.9
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 1.5e-76 291.6 648 59.4
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 3.7e-75 287.0 651 54.4
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 6.2e-75 286.2 551 64.1
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 1.1e-74 285.4 641 57.9
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 1.8e-74 284.6 639 57.3
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.2e-73 282.0 656 58.1
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 1.2e-73 282.0 637 58.9
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 4.5e-73 280.0 643 54.1
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 5.8e-73 279.6 657 57.7
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.7e-72 278.1 640 58.6
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 3.8e-72 276.9 648 57.4
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 6.4e-72 276.2 648 58.8
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 8.4e-72 275.8 663 58.2
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.1e-71 275.4 631 59.9
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 2.5e-71 274.2 657 51.8
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 5.5e-71 273.1 640 57.2
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 9.3e-71 272.3 653 49.3
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 1.6e-70 271.6 646 51.5
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 6.0e-70 269.6 666 58.0
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.0e-69 268.9 685 51.1
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 2.3e-69 267.7 633 45.5
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 2.3e-69 267.7 637 57.0
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 5.1e-69 266.5 669 52.9
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 6.7e-69 266.2 646 58.4
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 8.7e-69 265.8 645 57.2
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 1.1e-68 265.4 645 56.3
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 5.6e-68 263.1 639 58.2
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 9.6e-68 262.3 503 51.9
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 3.7e-67 260.4 652 54.8
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 4.8e-67 260.0 645 56.6
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 4.8e-67 260.0 642 56.9
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 4.5e-65 253.4 655 55.9
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 5.8e-65 253.1 350 46.3
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 1.4e-63 248.4 663 54.8
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 3.3e-60 237.3 643 54.4
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 1.6e-59 235.0 643 51.8
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 8.2e-59 232.6 646 54.3
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 5.0e-56 223.4 667 53.4
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 9.4e-55 219.2 667 53.1
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 2.1e-54 218.0 656 53.4
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.6e-54 217.2 668 53.4
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 9.1e-50 202.6 629 49.6
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 1.5e-49 201.8 630 44.9
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 2.1e-46 191.4 365 60.0
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 1.3e-43 182.2 494 48.4
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 1.1e-42 179.1 522 32.2
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 1.8e-42 178.3 636 40.3
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 4.1e-42 177.2 645 39.1
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 7.0e-42 176.4 270 42.2
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 3.8e-40 170.6 202 78.2
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 2.5e-39 167.9 587 49.4
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 2.5e-39 167.9 486 49.2
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 9.1e-34 149.4 517 46.2
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 1.6e-33 148.7 194 74.2
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 7.7e-33 146.4 260 39.2
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 5.5e-31 140.2 357 37.0
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 4.7e-30 137.1 480 44.6
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 2.3e-29 134.8 174 82.8
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 2.4e-26 124.8 237 48.9
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 7.0e-26 123.2 306 35.6
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 5.9e-25 120.2 636 36.0
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 3.6e-22 110.9 147 44.2
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 8.0e-22 109.8 561 47.2
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.5e-20 105.5 619 33.8
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 8.6e-16 89.7 55 65.5
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 7.5e-12 76.6 75 54.7
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 2.0e-09 68.6 56 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 7.8e-09 66.6 194 26.3
HanXRQChr11g0339451 Helianthus annuus HOM05D001137 ORTHO05D001967 5.6e-07 60.5 193 24.4
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 7.3e-07 60.1 185 23.8
Nitab4.5_0002432g0050 Nicotiana tabacum HOM05D001137 ORTHO05D001967 9.5e-07 59.7 185 23.8
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 9.5e-07 59.7 177 23.7
SMO339G0040 Selaginella moellendorffii HOM05D001137 ORTHO05D001967 9.5e-07 59.7 49 46.9
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.2e-06 59.3 46 54.3
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 1.6e-06 58.9 55 47.3
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 1.6e-06 58.9 55 47.3
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 2.1e-06 58.5 53 41.5
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 2.1e-06 58.5 47 51.1
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 2.1e-06 58.5 46 54.3
AT1G74150 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 2.8e-06 58.2 49 46.9
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 2.8e-06 58.2 52 44.2
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 3.6e-06 57.8 49 46.9
ECA236G0157 Erigeron canadensis HOM05D000001 ORTHO05D001967 3.6e-06 57.8 193 23.3
FvH4_6g06301 Fragaria vesca HOM05D001137 ORTHO05D001967 3.6e-06 57.8 193 22.8
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.6e-06 57.8 193 22.8
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 3.6e-06 57.8 193 23.3
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 3.6e-06 57.8 55 45.5
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 3.6e-06 57.8 55 45.5
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 3.6e-06 57.8 183 25.1
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 4.7e-06 57.4 182 24.2
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 6.1e-06 57.0 184 25.5
RcHm_v2.0_Chr1g0333981 Rosa chinensis HOM05D004809 ORTHO05D006732 6.1e-06 57.0 193 22.8
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 6.1e-06 57.0 193 22.3
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.1e-06 57.0 46 52.2
AagrBONN_evm.TU.Sc2ySwM_228.784 Anthoceros agrestis HOM05D001137 ORTHO05D001967 8.0e-06 56.6 185 22.7
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 8.0e-06 56.6 49 44.9
Os12g0540800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D001967 8.0e-06 56.6 193 23.3
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 8.0e-06 56.6 177 22.6


User provided reference genes

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