Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 4.0e-164 582.0 466 100.0
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 5.3e-108 395.6 482 78.8
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 8.9e-79 298.5 482 70.5
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 4.1e-68 263.1 540 39.3
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 6.2e-40 169.5 492 55.3
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.5e-38 164.9 504 45.2
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.1e-35 154.5 468 54.3
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 3.5e-35 153.7 474 55.1
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 2.3e-34 151.0 486 52.1
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 3.9e-34 150.2 481 50.3
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 5.6e-33 146.4 489 47.6
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.8e-32 144.1 294 37.4
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.8e-32 144.1 294 37.4
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.4e-31 141.7 476 53.2
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.4e-31 141.7 275 40.7
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.5e-30 138.3 300 36.0
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.0e-30 137.9 317 36.9
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 3.4e-30 137.1 500 50.8
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.4e-30 137.1 466 53.6
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 7.6e-30 136.0 276 37.0
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 7.6e-30 136.0 477 54.9
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.6e-30 136.0 477 54.9
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 9.9e-30 135.6 529 50.3
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 1.3e-29 135.2 490 54.1
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.2e-29 134.4 477 54.7
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 2.2e-29 134.4 480 47.7
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 2.9e-29 134.0 520 50.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 3.8e-29 133.7 265 36.6
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 8.4e-29 132.5 504 49.4
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 1.4e-28 131.7 499 47.5
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 1.9e-28 131.3 479 48.0
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 2.4e-28 131.0 516 50.4
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 3.2e-28 130.6 279 37.3
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 4.2e-28 130.2 470 54.7
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 5.5e-28 129.8 493 51.9
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 7.1e-28 129.4 267 36.0
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 9.3e-28 129.0 480 54.4
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 1.6e-27 128.3 486 51.0
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 2.1e-27 127.9 470 53.4
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.7e-27 127.5 491 51.5
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.6e-27 126.7 481 44.7
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.1e-26 123.2 482 46.7
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 3.3e-25 120.6 478 38.7
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.3e-25 120.6 274 32.8
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 5.6e-25 119.8 263 33.5
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.3e-24 118.6 350 32.0
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 1.6e-24 118.2 505 43.2
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 4.8e-24 116.7 470 51.1
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 4.8e-24 116.7 467 53.5
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 1.4e-23 115.2 237 36.3
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 1.8e-23 114.8 463 45.1
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 3.1e-23 114.0 484 51.4
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 4.0e-23 113.6 294 33.0
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 4.0e-23 113.6 261 35.6
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 6.9e-23 112.8 489 42.3
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 1.2e-22 112.1 292 34.9
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.5e-22 111.7 297 32.3
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.6e-22 110.9 276 34.8
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 5.8e-22 109.8 305 31.5
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 5.8e-22 109.8 467 53.5
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.3e-21 108.6 297 30.6
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 1.3e-21 108.6 472 50.8
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 2.9e-21 107.5 491 51.1
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 6.5e-21 106.3 167 40.7
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.1e-20 105.5 285 34.0
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 5.5e-20 103.2 463 45.1
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 7.1e-20 102.8 322 58.4
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 3.5e-19 100.5 492 50.4
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 6.0e-19 99.8 475 37.3
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 7.9e-19 99.4 463 51.0
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.3e-18 98.6 313 31.0
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 3.0e-18 97.4 474 51.1
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 5.1e-18 96.7 467 51.8
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 3.3e-17 94.0 489 43.6
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 1.6e-16 91.7 462 49.8
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 2.8e-16 90.9 270 30.4
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 3.7e-16 90.5 339 48.4
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.4e-15 88.6 86 57.0
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.4e-15 88.6 289 28.0
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 1.4e-15 88.6 261 34.1
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 3.4e-14 84.0 475 49.5
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 1.9e-12 78.2 83 49.4
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 3.2e-12 77.4 83 49.4
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 5.5e-12 76.6 477 51.2
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 5.5e-12 76.6 259 27.8
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.6e-11 75.1 491 46.4
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 7.9e-11 72.8 50 72.0
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 6.7e-10 69.7 182 31.3
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 8.7e-10 69.3 473 50.5
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 8.7e-10 69.3 505 48.7
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.1e-09 68.9 266 28.6
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 7.4e-09 66.2 465 50.8
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 9.7e-09 65.9 273 30.0
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 2.8e-08 64.3 278 27.0
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 3.7e-08 63.9 52 63.5
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 1.4e-07 62.0 52 59.6
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.8e-07 61.6 56 57.1
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 2.4e-07 61.2 71 45.1
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 2.4e-07 61.2 71 45.1
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 3.1e-07 60.8 263 26.2
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 4.1e-07 60.5 264 29.2
Mapoly0097s0057 Marchantia polymorpha HOM05D022173 ORTHO05D008520 9.0e-07 59.3 272 29.8
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 1.5e-06 58.5 270 26.7
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 1.5e-06 58.5 270 26.7
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 2.6e-06 57.8 69 44.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 2.6e-06 57.8 85 40.0
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 4.5e-06 57.0 43 65.1


User provided reference genes

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