Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 0.0e+00 1560.0 840 100.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 0.0e+00 1131.7 881 74.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 0.0e+00 1100.1 882 70.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 0.0e+00 1090.5 881 70.5
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 7.4e-302 1040.4 866 69.9
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 4.3e-124 449.9 818 39.4
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.2e-119 433.7 833 38.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 3.9e-117 426.8 819 38.1
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 8.7e-117 425.6 813 37.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.5e-116 424.1 778 39.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.6e-115 421.4 810 37.0
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.6e-115 420.2 829 37.9
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 8.1e-115 419.1 824 37.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.8e-114 417.9 808 38.4
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 9.0e-114 415.6 854 36.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.5e-113 414.8 854 36.9
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.3e-112 411.8 827 36.6
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.1e-111 408.7 846 37.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.4e-111 408.3 850 37.3
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.2e-111 406.8 835 37.2
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 7.1e-111 406.0 808 37.7
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.1e-110 404.4 833 37.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.3e-109 401.7 764 38.0
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.3e-109 401.0 823 37.5
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 7.4e-108 396.0 833 38.1
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-106 392.1 825 36.5
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-106 390.6 830 37.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 4.0e-106 390.2 836 36.4
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-105 388.7 825 36.1
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 5.8e-105 386.3 810 35.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.7e-104 384.8 831 36.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.4e-104 382.5 836 37.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-103 382.1 836 37.2
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-102 378.6 836 36.8
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.7e-102 377.5 838 35.7
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.5e-102 377.1 823 36.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 3.5e-102 377.1 769 38.1
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.7e-101 372.5 832 37.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.5e-100 370.9 818 35.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.3e-100 370.5 826 35.2
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.6e-100 369.0 818 35.9
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.1e-99 365.9 814 35.1
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.4e-98 364.4 835 36.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.2e-97 362.1 815 34.7
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.6e-97 360.9 618 40.1
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.0e-96 359.0 822 34.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 6.5e-96 356.3 820 34.6
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 8.4e-96 355.9 801 34.7
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.5e-95 354.4 812 34.9
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 7.1e-95 352.8 818 35.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 4.3e-92 343.6 818 33.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.1e-91 341.3 597 39.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.4e-90 337.8 818 34.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 5.3e-90 336.7 827 33.6
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 5.0e-88 330.1 863 32.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.3e-87 325.9 846 33.6
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.1e-86 324.7 812 34.2
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 3.9e-85 320.5 823 32.4
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.5e-84 317.8 586 38.9
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 2.2e-83 314.7 794 31.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-81 308.1 571 37.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.4e-81 307.4 807 33.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.5e-80 302.8 611 36.5
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.2e-79 300.4 855 32.5
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.6e-78 297.4 588 37.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.3e-77 294.7 834 32.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 7.4e-76 289.7 826 31.8
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 6.3e-75 286.6 835 31.0
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.1e-74 285.8 811 30.8
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.3e-72 278.9 468 41.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.1e-71 275.8 780 32.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.2e-71 273.9 747 32.9
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.2e-70 272.3 533 37.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.2e-70 272.3 624 34.6
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 2.1e-70 271.6 485 38.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.0e-69 269.2 549 38.3
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.0e-69 269.2 414 41.3
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.4e-69 268.9 802 32.8
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 6.7e-69 266.5 474 38.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.8e-67 261.2 573 37.2
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.7e-67 260.8 483 40.6
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.8e-67 260.4 737 32.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 4.5e-65 253.8 844 30.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.5e-65 253.8 592 35.3
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-64 252.3 595 33.6
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 6.5e-64 250.0 481 38.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 6.5e-64 250.0 688 33.0
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 6.5e-64 250.0 820 30.2
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.1e-63 249.2 859 30.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.2e-63 247.3 647 32.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 5.5e-63 246.9 859 29.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 9.4e-63 246.1 686 33.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.7e-62 243.8 541 35.7
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.1e-62 243.4 776 30.5
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.0e-61 242.7 822 31.8
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.0e-61 242.7 824 30.9
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.8e-61 241.9 691 32.6
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 3.0e-61 241.1 471 38.6
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 4.0e-61 240.7 638 34.0
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.0e-60 238.4 599 34.4
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.1e-58 230.7 601 33.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.6e-57 228.8 633 32.1
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.0e-57 228.4 592 34.1
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-57 228.0 783 30.7
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.0e-56 223.8 818 29.3
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 4.2e-55 220.7 819 29.1
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 4.2e-55 220.7 717 30.5
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 7.2e-55 219.9 707 31.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 7.2e-55 219.9 629 31.6
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 7.2e-55 219.9 629 31.6
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.4e-55 219.5 608 32.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 9.4e-55 219.5 594 33.5
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 8.0e-54 216.5 831 29.0
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.0e-53 216.1 594 33.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 8.8e-53 213.0 831 28.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.8e-52 209.5 826 28.6
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 9.8e-52 209.5 630 30.8
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.2e-51 208.4 838 28.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.3e-51 206.8 805 29.2
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.1e-50 204.1 630 30.6
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 5.4e-50 203.8 830 27.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.1e-50 203.0 573 32.3
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.2e-49 202.6 814 28.9
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 5.9e-49 200.3 794 27.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.9e-49 200.3 683 29.4
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.3e-48 199.1 821 27.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.7e-48 198.7 625 32.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 8.6e-48 196.4 452 32.7
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.2e-47 194.5 615 31.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.4e-44 184.1 569 30.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 9.8e-44 183.0 557 29.4
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-43 182.6 772 28.0
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.6e-41 175.6 620 28.1
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.9e-41 173.7 571 31.3
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.0e-40 172.9 804 28.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.8e-40 171.0 627 27.1
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 5.6e-39 167.2 423 33.1
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-35 156.0 695 26.8
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.9e-35 154.8 623 29.2
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.7e-33 148.3 685 27.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.9e-32 144.4 647 26.7
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 6.6e-32 143.7 594 27.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.3e-31 141.4 402 31.1
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 4.0e-29 134.4 630 29.0
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 4.4e-28 131.0 787 24.7
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.6e-25 122.5 598 28.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 3.5e-25 121.3 722 24.9
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.5e-23 115.9 384 28.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.6e-23 114.0 359 30.4
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.1e-21 109.8 592 25.8
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.0e-21 107.8 511 26.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.5e-20 105.9 517 25.3
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.5e-20 103.6 599 25.7
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.3e-15 88.2 640 24.1
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-10 72.8 743 22.7
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.0e-08 65.1 374 25.7
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.3e-07 61.2 85 38.8
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.3e-07 61.2 85 38.8
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.2e-06 59.7 511 23.9


User provided reference genes

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