Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 0.0e+00 1442.2 738 100.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 0.0e+00 1243.4 744 87.1
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 0.0e+00 1112.1 750 81.7
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.8e-275 952.6 765 66.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.0e-274 949.1 752 66.5
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.9e-273 945.3 761 65.8
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.9e-272 942.6 762 66.1
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 5.4e-272 941.0 753 65.6
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 7.0e-272 940.6 762 65.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 6.0e-271 937.6 758 65.2
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 4.3e-269 931.4 752 66.0
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 3.6e-268 928.3 756 65.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-266 923.3 748 65.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 9.8e-266 920.2 748 64.6
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.3e-265 917.1 812 61.2
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 9.2e-264 913.7 755 64.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.2e-263 913.3 778 62.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 6.6e-262 907.5 757 63.8
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.9e-261 906.0 749 63.2
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 7.3e-261 904.0 740 64.1
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 9.5e-261 903.7 746 63.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.2e-260 903.3 793 62.2
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.6e-260 902.9 754 64.7
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.6e-260 901.7 787 61.6
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.2e-260 901.0 742 64.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.8e-259 899.4 742 64.3
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.8e-259 899.4 748 63.5
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.0e-259 898.3 742 64.3
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 8.9e-259 897.1 740 63.8
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.2e-258 896.7 720 66.1
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.2e-257 892.5 746 63.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 3.8e-257 891.7 749 64.8
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 2.3e-254 882.5 745 61.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.3e-254 882.5 734 62.5
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 2.3e-254 882.5 757 61.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 6.6e-254 880.9 742 61.9
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 8.6e-254 880.6 746 61.3
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 8.6e-254 880.6 741 63.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.9e-253 879.4 773 60.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.5e-253 879.0 735 63.1
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.1e-251 873.6 744 62.1
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.4e-251 872.5 772 60.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 9.3e-248 860.5 536 84.7
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.6e-247 859.8 747 62.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.7e-247 859.0 825 58.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 6.0e-247 857.8 758 59.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 3.0e-246 855.5 760 61.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 5.1e-246 854.7 748 62.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.7e-246 854.0 790 59.0
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 2.8e-244 849.0 777 60.7
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 8.1e-244 847.4 742 60.0
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.8e-243 846.3 729 60.8
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.9e-241 839.0 736 61.0
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.9e-241 839.0 740 59.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 3.8e-241 838.6 748 59.1
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 2.4e-240 835.9 743 59.9
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.7e-239 832.4 747 58.6
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.5e-237 825.9 760 59.9
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.3e-237 825.1 733 58.3
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 4.8e-236 821.6 776 57.3
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 8.1e-236 820.8 723 58.2
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.3e-235 818.1 735 58.4
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.5e-234 816.6 765 57.5
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 2.0e-234 816.2 680 62.2
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.7e-231 805.8 723 58.8
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.9e-230 802.0 727 60.4
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 8.7e-230 800.8 756 57.0
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 4.0e-227 792.0 774 55.0
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 4.5e-226 788.5 777 55.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.3e-225 786.9 774 54.9
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.3e-225 786.9 724 56.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.9e-224 783.1 764 55.8
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.5e-224 782.7 927 51.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 6.3e-220 768.1 773 53.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.4e-219 766.1 739 55.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 9.0e-219 764.2 738 55.0
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-218 762.7 723 55.0
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 2.6e-218 762.7 738 54.2
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 6.5e-217 758.1 722 54.7
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 6.5e-217 758.1 753 55.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 8.5e-217 757.7 717 55.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.1e-216 757.3 722 55.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.9e-216 756.5 686 59.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 2.5e-216 756.1 725 54.9
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 5.5e-216 755.0 778 53.0
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 4.6e-215 751.9 731 54.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.0e-214 750.7 753 55.2
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.8e-211 740.0 740 54.1
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 3.4e-210 735.7 398 91.5
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.0e-205 719.9 769 51.9
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.7e-204 715.7 738 53.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.3e-201 707.2 646 59.8
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 2.0e-189 666.8 730 50.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 3.4e-181 639.4 740 47.2
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.0e-178 630.2 743 49.4
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.0e-178 630.2 743 49.4
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.0e-178 630.2 743 49.4
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.0e-178 630.2 632 56.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.3e-177 627.5 702 50.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.9e-176 623.6 433 71.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.7e-169 600.5 822 43.8
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.5e-168 596.7 683 49.6
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 3.6e-167 592.8 592 54.6
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.6e-159 566.2 592 52.4
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 7.8e-154 548.5 727 43.1
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.2e-151 541.2 448 60.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.2e-150 535.8 616 51.5
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.5e-149 534.3 511 60.3
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.4e-139 500.4 532 53.6
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.8e-126 457.6 497 53.3
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 9.9e-117 425.2 260 77.3
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 5.6e-112 409.5 574 43.9
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 7.4e-96 355.9 505 45.0
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.3e-84 318.5 353 49.3
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.6e-74 283.9 186 71.5
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 9.1e-70 269.2 239 62.8
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 5.9e-61 240.0 173 69.4
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-53 215.7 154 65.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 6.8e-49 199.9 142 65.5
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.4e-46 192.2 168 55.4
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-46 191.8 118 78.0
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 3.9e-44 184.1 134 64.9
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 7.5e-40 169.9 135 57.8
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.9e-39 167.9 130 66.9
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.7e-36 158.7 114 73.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.0e-33 147.5 86 80.2
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-31 141.7 154 45.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 6.6e-28 130.2 406 26.8
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.1e-27 129.4 275 33.1
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.2e-24 119.4 83 67.5
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.5e-24 119.0 74 74.3
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.0e-24 118.6 117 50.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 6.0e-21 107.1 539 22.1
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.7e-20 105.5 128 43.0
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.3e-20 105.1 112 44.6
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 5.8e-16 90.5 149 33.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.1e-13 82.0 325 26.5
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.6e-10 71.2 47 70.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-10 70.9 58 58.6
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.3e-07 62.8 70 52.9
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 5.4e-06 57.4 65 49.2


User provided reference genes

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