Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.0e-244 849.7 457 100.0
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 9.9e-192 673.7 474 78.7
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 3.5e-189 665.2 475 77.3
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.0e-188 662.1 478 77.2
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 5.7e-131 471.9 475 57.7
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 8.3e-122 441.4 464 56.0
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 7.8e-120 434.9 474 56.1
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.0e-119 434.5 478 55.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 8.0e-117 424.9 458 54.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-116 424.5 472 56.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 6.8e-116 421.8 459 55.3
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 6.8e-116 421.8 461 55.7
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.2e-115 421.0 406 57.9
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.5e-115 418.3 400 57.5
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 9.8e-115 417.9 436 54.4
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.2e-114 416.8 472 54.4
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 6.4e-114 415.2 471 53.3
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 6.4e-114 415.2 467 55.9
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 8.3e-114 414.8 459 54.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 8.3e-114 414.8 468 53.6
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 8.3e-114 414.8 456 53.5
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.4e-113 414.1 463 53.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 5.4e-113 412.1 455 53.6
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 9.2e-113 411.4 508 50.8
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 7.8e-112 408.3 401 58.9
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 8.6e-111 404.8 428 54.2
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.3e-110 402.9 457 53.2
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.6e-110 402.1 425 53.9
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.6e-109 400.6 409 56.7
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.1e-109 400.2 393 57.3
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.8e-109 399.8 451 53.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 4.7e-109 399.1 463 51.6
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.4e-108 397.5 398 59.5
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.4e-108 397.5 462 49.6
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.8e-108 397.1 320 64.7
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.8e-108 397.1 395 57.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.3e-108 396.7 457 51.9
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 6.8e-108 395.2 459 51.6
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.5e-107 394.0 440 53.4
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 2.0e-107 393.7 394 57.1
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.6e-107 393.3 402 55.5
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 3.4e-107 392.9 404 55.7
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 3.4e-107 392.9 441 52.4
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 7.5e-107 391.7 312 64.7
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 7.5e-107 391.7 435 54.5
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.7e-106 390.6 441 51.7
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.2e-106 390.2 318 62.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.9e-106 389.8 402 53.5
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 6.4e-106 388.7 487 50.1
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.4e-106 388.7 313 63.3
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.3e-106 388.3 449 51.7
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 8.3e-106 388.3 313 63.3
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.4e-105 387.5 459 51.2
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 5.4e-105 385.6 454 51.8
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 7.1e-105 385.2 392 58.4
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 7.1e-105 385.2 404 54.7
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.6e-104 384.0 318 62.6
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 3.5e-104 382.9 316 63.9
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.7e-103 380.6 326 61.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.1e-102 377.9 501 49.1
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 4.3e-102 375.9 429 53.4
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.6e-102 375.6 313 62.3
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 9.5e-102 374.8 401 52.9
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.1e-100 369.8 457 49.5
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 8.9e-100 368.2 409 52.6
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 2.0e-99 367.1 473 52.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 2.0e-99 367.1 466 50.6
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 3.4e-99 366.3 400 54.0
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 5.8e-99 365.5 472 49.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 3.8e-98 362.8 395 52.4
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 4.9e-98 362.5 519 46.1
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 6.4e-98 362.1 394 52.3
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.1e-97 361.3 340 56.8
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.2e-97 359.8 335 59.1
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 6.0e-96 355.5 324 59.0
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 6.0e-96 355.5 491 47.9
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 7.8e-96 355.1 491 45.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 8.7e-95 351.7 495 47.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.1e-94 351.3 344 55.5
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.5e-94 350.9 411 52.1
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.9e-94 350.5 405 51.9
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.9e-94 350.5 490 46.9
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.7e-93 345.9 516 45.5
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 6.2e-93 345.5 441 49.0
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 4.9e-90 335.9 475 45.7
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 2.4e-89 333.6 259 67.2
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.2e-88 331.3 392 50.3
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.2e-88 331.3 299 58.9
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.3e-86 323.2 482 45.4
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.3e-86 322.8 405 48.6
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 2.4e-84 317.0 394 48.7
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.2e-81 306.6 257 61.1
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 4.6e-80 302.8 394 45.9
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 6.4e-74 282.3 353 52.7
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 7.1e-73 278.9 413 43.8
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 7.4e-70 268.9 295 49.8
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.6e-69 267.7 340 49.7
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.8e-68 264.2 398 41.7
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.6e-64 251.1 329 45.3
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 8.7e-63 245.4 276 52.2
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 6.3e-61 239.2 298 44.6
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 2.4e-60 237.3 422 38.2
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.4e-60 237.3 284 46.5
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 9.1e-52 208.8 204 54.4
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.1e-52 208.8 171 63.7
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.6e-51 207.2 285 45.3
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 7.4e-46 189.1 197 54.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.2e-45 187.6 166 60.8
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 2.6e-43 180.6 256 41.4
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 7.2e-41 172.6 147 61.9
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 3.3e-38 163.7 122 68.9
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.0e-34 152.1 130 59.2
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 3.6e-32 143.7 107 67.3
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 4.7e-32 143.3 230 35.7
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 5.2e-31 139.8 118 61.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.5e-30 138.3 185 42.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 5.3e-28 129.8 124 58.9
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 5.3e-28 129.8 124 58.9
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 3.5e-27 127.1 130 54.6
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.5e-27 127.1 192 42.2
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.1e-24 117.9 88 67.0
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.8e-20 104.8 62 80.6
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.5e-14 85.1 64 57.8
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 3.4e-14 84.0 96 43.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 9.8e-14 82.4 92 51.1
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 3.5e-11 73.9 50 70.0
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 7.8e-11 72.8 69 53.6
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 5.0e-10 70.1 172 32.0
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.3e-09 67.0 58 55.2
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 5.6e-09 66.6 45 68.9
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 3.1e-07 60.8 185 30.8


User provided reference genes

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