Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 7.0e-33 143.3 68 100.0
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.8e-25 118.6 69 84.1
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.8e-25 118.6 66 83.3
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 9.1e-25 116.3 66 81.8
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 4.7e-13 77.4 58 60.3
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 6.1e-13 77.0 65 60.0
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 6.8e-12 73.6 66 53.0
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 6.8e-12 73.6 71 54.9
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 1.2e-11 72.8 68 58.8
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 9.8e-11 69.7 64 54.7
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 9.8e-11 69.7 62 61.3
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 4.8e-10 67.4 67 52.2
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 4.8e-10 67.4 57 57.9
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 6.3e-10 67.0 58 53.4
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 1.1e-09 66.2 60 51.7
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 1.1e-09 66.2 56 62.5
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.4e-09 65.9 56 62.5
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 3.1e-09 64.7 63 54.0
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 3.1e-09 64.7 60 53.3
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 4.1e-09 64.3 50 62.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 5.4e-09 63.9 60 55.0
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 7.0e-09 63.5 68 51.5
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 7.0e-09 63.5 68 51.5
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.0e-09 63.5 64 57.8
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.0e-09 63.5 61 55.7
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 7.0e-09 63.5 57 54.4
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.0e-09 63.5 60 53.3
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 9.1e-09 63.2 67 52.2
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.2e-08 62.8 67 46.3
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 1.2e-08 62.8 59 57.6
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.6e-08 62.4 54 53.7
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 1.6e-08 62.4 67 52.2
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.6e-08 62.4 67 52.2
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 1.6e-08 62.4 62 54.8
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.6e-08 62.4 63 47.6
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 2.7e-08 61.6 53 50.9
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 2.7e-08 61.6 60 51.7
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 3.5e-08 61.2 50 58.0
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 3.5e-08 61.2 63 49.2
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 3.5e-08 61.2 49 59.2
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 4.5e-08 60.8 67 49.3
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.9e-08 60.5 51 56.9
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.7e-08 60.1 67 49.3
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 7.7e-08 60.1 64 48.4
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 1.0e-07 59.7 64 51.6
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 1.0e-07 59.7 68 50.0
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 1.0e-07 59.7 60 48.3
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 1.0e-07 59.7 70 47.1
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.0e-07 59.7 66 50.0
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 1.7e-07 58.9 50 56.0
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 1.7e-07 58.9 50 56.0
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.7e-07 58.9 61 55.7
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 1.7e-07 58.9 67 50.7
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.3e-07 58.5 58 51.7
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 2.9e-07 58.2 53 52.8
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.9e-07 58.2 61 50.8
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 2.9e-07 58.2 58 60.3
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.9e-07 58.2 54 55.6
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.9e-07 58.2 54 55.6
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 2.9e-07 58.2 50 56.0
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 3.8e-07 57.8 66 47.0
Zm00001eb211640 Zea mays HOM05D004372 ORTHO05D004331 3.8e-07 57.8 65 49.2
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 5.0e-07 57.4 45 57.8
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 6.6e-07 57.0 62 50.0
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 6.6e-07 57.0 62 50.0
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 6.6e-07 57.0 63 49.2
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 8.6e-07 56.6 54 50.0
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 8.6e-07 56.6 64 50.0
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.1e-06 56.2 55 50.9
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.1e-06 56.2 68 47.1
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.5e-06 55.8 60 48.3
Thecc.10G036700 Theobroma cacao HOM05D022458 ORTHO05D025182 1.5e-06 55.8 59 49.2
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.9e-06 55.5 68 47.1
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 1.9e-06 55.5 65 46.2
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 1.9e-06 55.5 47 53.2
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 3.3e-06 54.7 68 47.1
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 4.2e-06 54.3 54 46.3
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 4.2e-06 54.3 48 56.2
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 4.2e-06 54.3 61 52.5
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 5.5e-06 53.9 59 47.5
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 7.2e-06 53.5 68 45.6
Migut.F00765 Erythranthe guttata HOM05D004372 ORTHO05D004331 7.2e-06 53.5 49 55.1
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 7.2e-06 53.5 58 46.6
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 9.5e-06 53.1 62 45.2
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 9.5e-06 53.1 63 44.4
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 9.5e-06 53.1 57 50.9
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 9.5e-06 53.1 67 44.8


User provided reference genes

Program Settings