Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 6.2e-121 437.6 237 100.0
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 6.3e-89 331.3 246 76.0
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.0e-87 326.2 246 74.0
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.2e-71 273.9 231 69.3
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 4.4e-34 149.1 242 40.9
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.7e-33 147.1 237 41.8
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.7e-33 147.1 244 41.8
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.2e-33 146.7 238 42.0
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 5.4e-32 142.1 248 39.1
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 1.1e-29 134.4 202 43.1
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.1e-29 134.4 205 44.4
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.5e-29 134.0 206 42.7
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 3.3e-29 132.9 206 40.8
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 3.3e-29 132.9 238 37.8
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 4.3e-29 132.5 211 43.1
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 2.8e-28 129.8 206 40.8
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 6.2e-28 128.6 207 44.9
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.1e-27 127.9 211 39.8
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.8e-27 127.1 258 39.5
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.8e-27 127.1 216 40.3
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.8e-27 127.1 216 40.3
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.1e-27 126.3 238 38.7
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 5.2e-27 125.6 142 49.3
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 6.8e-27 125.2 254 36.2
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 2.0e-26 123.6 237 38.4
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 4.4e-26 122.5 238 36.6
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 5.8e-26 122.1 205 41.0
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 9.9e-26 121.3 142 47.2
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.2e-25 120.2 139 47.5
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 2.9e-25 119.8 244 38.9
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 6.4e-25 118.6 202 41.1
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.4e-24 117.5 243 35.0
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 3.2e-24 116.3 236 39.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.2e-23 114.4 226 38.9
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 2.1e-23 113.6 242 38.4
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.1e-23 113.6 242 36.0
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 7.8e-23 111.7 144 47.9
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.3e-22 110.9 144 47.9
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.3e-22 110.9 202 39.1
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.3e-22 110.9 202 39.1
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.7e-22 110.5 237 37.1
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 5.1e-22 109.0 239 36.0
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.6e-22 108.6 142 45.1
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 8.6e-22 108.2 202 40.6
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 4.3e-21 105.9 209 36.8
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 4.3e-21 105.9 210 37.6
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.2e-20 104.4 209 38.3
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 1.1e-19 101.3 214 37.9
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 1.4e-19 100.9 247 32.8
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.8e-19 100.5 209 36.8
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 6.8e-19 98.6 194 38.1
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 6.8e-19 98.6 219 34.2
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 3.4e-18 96.3 210 37.1
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.7e-17 94.0 203 36.0
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.2e-17 93.6 143 42.7
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 2.2e-17 93.6 285 31.2
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 2.2e-17 93.6 222 34.2
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 2.9e-17 93.2 208 34.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 2.9e-17 93.2 223 35.0
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 3.8e-17 92.8 145 43.4
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 3.8e-17 92.8 227 35.7
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 4.9e-17 92.4 205 33.7
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 6.4e-17 92.0 209 37.3
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.1e-16 91.3 209 36.8
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.1e-16 91.3 143 42.0
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.1e-15 87.0 129 41.9
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.1e-15 87.0 210 32.9
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.1e-15 87.0 210 32.9
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.0e-14 84.7 141 39.7
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.7e-14 84.0 143 39.9
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.7e-14 84.0 210 35.2
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.3e-14 83.6 194 37.1
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 3.0e-14 83.2 210 34.8
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 8.7e-14 81.6 151 41.7
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.5e-13 80.9 141 39.7
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.3e-12 77.8 217 35.9
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.6e-12 77.4 218 37.2
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.8e-12 76.6 140 33.6
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 4.8e-12 75.9 149 34.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.2e-12 75.5 140 33.6
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 8.1e-12 75.1 238 31.1
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.1e-11 74.7 140 35.7
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.1e-11 74.7 106 43.4
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 1.1e-11 74.7 200 34.5
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 5.3e-11 72.4 151 34.4
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 9.9e-10 68.2 138 30.4
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 6.4e-09 65.5 138 29.7
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 5.4e-08 62.4 141 27.7
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 9.3e-08 61.6 117 35.9
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.2e-07 61.2 138 29.0
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.2e-07 61.2 141 33.3
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.0e-06 58.2 132 34.1
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 5.1e-06 55.8 203 30.0
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 6.6e-06 55.5 164 31.7


User provided reference genes

Program Settings