Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017107 Sechium edule HOM05D002310 ORTHO05D002326 0.0e+00 1516.9 748 100.0
ClCG08G008160 Citrullus lanatus HOM05D002310 ORTHO05D002326 2.4e-267 925.6 742 66.4
MELO3C019889.2 Cucumis melo HOM05D002310 ORTHO05D002326 2.6e-237 825.9 758 60.2
CsaV3_6G004130 Cucumis sativus L. HOM05D002310 ORTHO05D002326 7.7e-234 814.3 743 60.8
Sed0026294 Sechium edule HOM05D002310 ORTHO05D002326 1.0e-153 548.1 737 46.7
Cfa011244 Carpinus fangiana HOM05D002310 ORTHO05D002326 3.2e-86 323.9 785 33.0
Haze_02585 Corylus avellana HOM05D002310 ORTHO05D002326 3.5e-85 320.5 772 33.5
QL04p042592 Quercus lobata HOM05D002310 ORTHO05D002326 2.3e-81 307.8 782 33.8
MD07G1067200 Malus domestica HOM05D002310 ORTHO05D002326 3.1e-81 307.4 783 31.7
Prupe.2G084400 Prunus persica HOM05D002310 ORTHO05D002326 6.8e-81 306.2 756 32.7
CiPaw.13G037400 Carya illinoinensis HOM05D002310 ORTHO05D002326 1.2e-80 305.4 771 32.8
Potri.010G235700 Populus trichocarpa HOM05D002310 ORTHO05D002326 1.7e-79 301.6 793 31.7
Dinv20806 Davidia involucrata HOM05D002310 ORTHO05D002326 2.1e-77 294.7 767 32.1
MD02G1254600 Malus domestica HOM05D002310 ORTHO05D002326 3.9e-76 290.4 781 31.8
CiPaw.14G029600 Carya illinoinensis HOM05D002310 ORTHO05D002326 1.8e-73 281.6 771 31.1
Sabra10G0182800 Salix brachista HOM05D002310 ORTHO05D002326 1.2e-72 278.9 782 31.1
Potri.008G024500 Populus trichocarpa HOM05D002310 ORTHO05D002326 2.2e-71 274.6 791 30.6
CSS0033098 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 3.0e-68 264.2 746 31.1
COL.COLO4_20106 Corchorus olitorius HOM05D002310 ORTHO05D002326 7.3e-67 259.6 779 31.7
Cpa.g.sc19.12 Carica papaya HOM05D002310 ORTHO05D002326 4.7e-66 256.9 745 30.9
Manes.10G057200 Manihot esculenta HOM05D002310 ORTHO05D002326 1.1e-65 255.8 768 31.2
FAN03G0072 Fragaria x ananassa HOM05D002310 ORTHO05D002326 5.2e-65 253.4 768 31.0
RcHm_v2.0_Chr1g0332961 Rosa chinensis HOM05D002310 ORTHO05D002326 9.0e-65 252.7 775 30.3
Thecc.10G104000 Theobroma cacao HOM05D002310 ORTHO05D002326 1.5e-64 251.9 777 30.9
Actinidia18583 Actinidia chinensis HOM05D002310 ORTHO05D002326 2.0e-64 251.5 762 31.2
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 7.6e-64 249.6 799 29.9
FvH4_7g05850 Fragaria vesca HOM05D002310 ORTHO05D002326 9.3e-62 242.7 778 29.8
FAN01G2365 Fragaria x ananassa HOM05D002310 ORTHO05D002326 4.6e-61 240.4 776 30.2
FAN06G0045 Fragaria x ananassa HOM05D002310 ORTHO05D002326 6.0e-61 240.0 776 30.2
Dinv06794 Davidia involucrata HOM05D002310 ORTHO05D002326 2.3e-60 238.0 778 29.7
FAN10G0348 Fragaria x ananassa HOM05D002310 ORTHO05D002326 8.7e-60 236.1 782 29.7
Duzib106G1173 Durio zibethinus HOM05D002310 ORTHO05D002326 1.5e-59 235.3 789 30.2
Duzib114G0931 Durio zibethinus HOM05D002310 ORTHO05D002326 2.5e-59 234.6 752 31.4
Gohir.D04G019900 Gossypium hirsutum HOM05D002310 ORTHO05D002326 2.1e-58 231.5 774 31.0
Gorai.012G023700 Gossypium raimondii HOM05D002310 ORTHO05D002326 2.8e-58 231.1 773 30.8
Gohir.A05G395100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 2.4e-57 228.0 780 31.3
arahy.Tifrunner.gnm1.ann1.WY8BRN Arachis hypogaea HOM05D002310 ORTHO05D002326 5.3e-57 226.9 754 30.0
arahy.Tifrunner.gnm1.ann1.Y62G5D Arachis hypogaea HOM05D002310 ORTHO05D002326 2.9e-55 221.1 754 29.7
Hma1.2p1_0246F.1_g101720 Hydrangea macrophylla HOM05D002310 ORTHO05D002326 3.0e-52 211.1 748 28.6
Glyma.10G202800 Glycine max HOM05D002310 ORTHO05D002326 8.7e-52 209.5 779 29.1
Dinv01755 Davidia involucrata HOM05D002310 ORTHO05D002326 1.5e-51 208.8 564 31.6
Lj2C29T14 Lonicera japonica HOM05D002310 ORTHO05D002326 1.5e-51 208.8 773 28.1
Psat6g176920 Pisum sativum HOM05D002310 ORTHO05D002326 4.3e-51 207.2 784 29.0
Atru.chr12.977 Acer truncatum HOM05D002310 ORTHO05D002326 9.6e-51 206.1 818 28.2
Lalb_Chr21g0313261 Lupinus albus HOM05D002310 ORTHO05D002326 1.8e-49 201.8 772 28.1
Lj5g0012410 Lotus japonicus HOM05D002310 ORTHO05D002326 6.9e-49 199.9 782 28.5
Ca_10501_v3 Cicer arietinum L. HOM05D002310 ORTHO05D002326 5.8e-48 196.8 760 29.1
Glyma.20G187500 Glycine max HOM05D002310 ORTHO05D002326 2.9e-47 194.5 762 28.0
TAR633G0746 Trochodendron aralioides HOM05D002310 ORTHO05D002326 1.1e-46 192.6 737 29.2
Lalb_Chr02g0151431 Lupinus albus HOM05D002310 ORTHO05D002326 1.4e-46 192.2 776 28.6
Phvul.007G104100 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 5.1e-44 183.7 787 28.3
vmacro07230 Vaccinium macrocarpon HOM05D002310 ORTHO05D002326 8.7e-44 183.0 774 28.8
Ciclev10030758m.g Citrus clementina HOM05D002310 ORTHO05D002326 1.3e-42 179.1 496 32.3
Rhsim03G0104900 Rhododendron simsii HOM05D002310 ORTHO05D002326 3.7e-42 177.6 773 28.2
Medtr1g492940 Medicago truncatula HOM05D002310 ORTHO05D002326 2.7e-37 161.4 524 28.2
TWI15G0532 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 1.8e-36 158.7 765 26.8
TPR.G2524 Trifolium pratense HOM05D002310 ORTHO05D002326 2.5e-35 154.8 533 29.3
TWI38G0268 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 2.5e-35 154.8 763 26.0
Nn6g35014 Nelumbo nucifera HOM05D002310 ORTHO05D002326 1.4e-30 139.0 727 26.4
CANSAT56G1674 Cannabis sativa HOM05D002310 ORTHO05D002326 1.9e-27 128.6 224 39.3
PSO443G0025 Papaver somniferum HOM05D002310 ORTHO05D002326 5.9e-24 117.1 336 30.7
Aqoxy4G02858 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 3.2e-22 111.3 374 27.8
Lsat_1_v5_gn_8_24480 Lactuca sativa HOM05D002310 ORTHO05D002326 5.5e-22 110.5 415 26.5
PSO384G5061 Papaver somniferum HOM05D002310 ORTHO05D002326 1.6e-21 109.0 336 29.5
Sc09g0005520 Simmondsia chinensis HOM05D002310 ORTHO05D002326 3.0e-20 104.8 738 22.9
ECA233G1823 Erigeron canadensis HOM05D002310 ORTHO05D002326 1.1e-19 102.8 646 25.2
Eucgr.J01002 Eucalyptus grandis HOM05D002310 ORTHO05D002326 5.3e-17 94.0 621 24.0
PGR044G0491 Punica granatum HOM05D002310 ORTHO05D002326 9.1e-17 93.2 744 24.7
AUR62030725 Chenopodium quinoa HOM05D002310 ORTHO05D002326 7.7e-16 90.1 757 22.9
AUR62036362 Chenopodium quinoa HOM05D002310 ORTHO05D002326 2.9e-15 88.2 750 23.3
ATR0820G154 Amborella trichopoda HOM05D002310 ORTHO05D002326 9.4e-14 83.2 284 29.6
Aqoxy2G01357 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 1.2e-13 82.8 596 22.8
HanXRQChr08g0217861 Helianthus annuus HOM05D002310 ORTHO05D002326 2.7e-13 81.6 771 23.5
Dinv42583 Davidia involucrata HOM05D002310 ORTHO05D002326 1.4e-12 79.3 339 26.8
Oeu059860.1 Olea europaea HOM05D002310 ORTHO05D002326 3.0e-12 78.2 163 35.6
Ah.04g163710 Amaranthus hybridus HOM05D002310 ORTHO05D002326 5.7e-11 73.9 782 23.8
Nitab4.5_0000962g0080 Nicotiana tabacum HOM05D002310 ORTHO05D002326 9.7e-11 73.2 557 25.3
Nitab4.5_0005390g0030 Nicotiana tabacum HOM05D002310 ORTHO05D002326 1.3e-10 72.8 681 24.1
Cc02_g09970 Coffea canephora HOM05D002310 ORTHO05D002326 1.7e-10 72.4 508 25.0
Sopen11g003200 Solanum pennellii HOM05D002310 ORTHO05D002326 2.2e-10 72.0 551 24.0
Rhsim13G0106900 Rhododendron simsii HOM05D002310 ORTHO05D002326 2.8e-10 71.6 561 25.5
CAN.G534.15 Capsicum annuum HOM05D002310 ORTHO05D002326 4.8e-10 70.9 576 24.1
DCAR_006351 Daucus carota HOM05D002310 ORTHO05D002326 1.1e-09 69.7 610 22.3
Peaxi162Scf00244g01214 Petunia axillaris HOM05D002310 ORTHO05D002326 1.8e-09 68.9 541 24.8
SGA_v2.0_scaffold147G36352 Striga asiatica HOM05D002310 ORTHO05D002326 4.1e-09 67.8 283 29.3
CDE06G0922 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 7.0e-09 67.0 313 27.2
PGSC0003DMG400019495 Solanum tuberosum HOM05D002310 ORTHO05D002326 1.6e-08 65.9 545 24.2
Solyc11g007310.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 2.0e-08 65.5 470 24.3
CSS0005169 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 3.5e-08 64.7 744 23.4
SEGI_33353 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 3.5e-08 64.7 288 27.1
Lj2A990G28 Lonicera japonica HOM05D002310 ORTHO05D002326 1.0e-07 63.2 87 41.4
PGSC0003DMG400026527 Solanum tuberosum HOM05D002310 ORTHO05D002326 1.7e-07 62.4 108 36.1
GSVIVG01034740001 Vitis vinifera HOM05D002310 ORTHO05D002326 2.9e-07 61.6 39 69.2
Nitab4.5_0006089g0010 Nicotiana tabacum HOM05D002310 ORTHO05D002326 5.0e-07 60.8 108 34.3
Thecc.09G289700 Theobroma cacao HOM05D002310 ORTHO05D002326 8.5e-07 60.1 211 27.5
SalBow6G0002 Salvia bowleyana HOM05D002310 ORTHO05D002326 1.5e-06 59.3 64 51.6
Solyc11g066990.2 Solanum lycopersicum HOM05D002310 ORTHO05D002326 1.9e-06 58.9 108 35.2
Duzib168G1650 Durio zibethinus HOM05D002310 ORTHO05D002326 3.2e-06 58.2 90 41.1
EL10Ac7g15783 Beta vulgaris HOM05D002310 ORTHO05D002326 4.2e-06 57.8 68 42.6
Eucgr.B03884 Eucalyptus grandis HOM05D002310 ORTHO05D002326 5.5e-06 57.4 264 26.1
CAN.G644.19 Capsicum annuum HOM05D002310 ORTHO05D002326 7.2e-06 57.0 731 22.6
AUR62039251 Chenopodium quinoa HOM05D002310 ORTHO05D002326 7.2e-06 57.0 68 44.1
AUR62043074 Chenopodium quinoa HOM05D002310 ORTHO05D002326 7.2e-06 57.0 68 44.1


User provided reference genes

Program Settings