Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 5.3e-113 411.0 201 100.0
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.3e-90 336.7 197 85.8
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.1e-89 333.6 197 85.3
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 4.2e-86 321.6 197 83.8
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.6e-85 319.7 198 80.3
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.8e-74 282.3 178 77.0
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.5e-70 268.1 199 69.8
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 8.0e-69 264.2 185 73.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.3e-68 262.7 182 69.8
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.4e-67 258.8 180 72.2
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 5.7e-67 258.1 184 71.2
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 7.5e-67 257.7 195 68.2
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 9.1e-65 250.8 199 64.3
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.3e-63 246.9 197 67.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.1e-62 243.8 209 62.7
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 4.2e-62 241.9 183 67.2
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.2e-61 240.4 184 64.1
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.2e-61 240.4 203 61.6
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 2.8e-61 239.2 181 66.9
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 8.0e-61 237.7 197 65.5
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.0e-60 235.7 197 64.5
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 8.9e-60 234.2 177 62.7
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.6e-59 232.6 210 61.9
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.6e-59 232.6 198 63.1
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 5.7e-59 231.5 173 66.5
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 5.7e-59 231.5 204 61.3
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 9.8e-59 230.7 196 62.2
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 2.2e-58 229.6 200 60.0
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 2.8e-58 229.2 197 60.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.1e-57 227.3 173 67.6
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 7.0e-57 224.6 205 58.5
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.6e-56 223.4 182 65.9
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.6e-56 223.4 182 65.9
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.7e-56 222.6 206 60.2
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.7e-56 222.6 223 57.0
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.3e-55 220.3 206 60.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.7e-55 219.9 182 64.8
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.3e-55 219.5 200 58.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.9e-55 219.2 198 58.6
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 5.6e-54 214.9 210 56.7
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.6e-53 213.4 208 54.8
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.8e-53 212.6 211 54.0
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.0e-52 210.7 171 60.2
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.0e-52 210.7 183 57.4
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.0e-52 210.7 180 57.8
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.3e-52 209.5 177 57.6
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 4.0e-52 208.8 186 58.1
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 6.8e-52 208.0 197 53.8
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 8.9e-52 207.6 183 61.7
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 9.8e-51 204.1 178 56.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 4.9e-50 201.8 211 52.1
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 8.3e-50 201.1 195 57.4
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 8.3e-50 201.1 230 49.1
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.1e-49 200.7 179 59.8
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.4e-49 200.3 203 53.7
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.4e-49 200.3 183 59.0
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 1.9e-49 199.9 170 58.8
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 2.4e-49 199.5 206 51.0
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.4e-49 199.5 210 51.4
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 5.4e-49 198.4 179 56.4
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 7.0e-49 198.0 177 57.6
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.0e-48 196.4 215 51.6
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.5e-48 195.7 187 55.6
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 4.6e-48 195.3 226 49.1
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 7.8e-48 194.5 210 51.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.3e-47 193.7 177 52.0
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.3e-47 193.7 177 55.9
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.9e-47 192.2 178 55.6
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 5.0e-47 191.8 188 53.7
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.1e-46 190.7 196 48.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.9e-46 189.9 183 52.5
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.5e-46 189.5 202 50.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.3e-46 189.1 179 53.1
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 5.6e-46 188.3 187 55.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 7.3e-46 188.0 172 54.1
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 7.3e-46 188.0 208 50.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.2e-45 187.2 200 50.5
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.2e-45 187.2 182 57.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 4.7e-45 185.3 206 46.6
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 6.2e-45 184.9 208 48.1
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.8e-44 183.3 199 48.7
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 8.9e-44 181.0 208 50.0
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.2e-43 180.6 217 45.6
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.0e-43 179.9 186 49.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 4.4e-43 178.7 206 48.1
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.9e-42 176.0 189 50.8
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 6.4e-42 174.9 198 50.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.4e-42 174.9 203 51.7
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 6.4e-42 174.9 178 50.0
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.1e-41 174.1 174 50.6
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.4e-41 173.7 185 51.9
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.4e-41 172.9 215 45.1
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 3.2e-41 172.6 210 45.2
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 3.2e-41 172.6 210 45.2
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 4.1e-41 172.2 210 45.2
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 4.1e-41 172.2 210 45.2
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 4.1e-41 172.2 210 45.2
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 5.4e-41 171.8 185 53.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 9.2e-41 171.0 224 45.5
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 2.1e-40 169.9 168 56.5
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.7e-40 169.5 224 45.5
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 3.5e-40 169.1 132 63.6
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.7e-39 166.8 154 55.8
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.7e-39 166.8 183 49.2
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.5e-38 162.9 191 48.2
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.3e-36 156.4 304 37.5
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 2.3e-36 156.4 184 47.8
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.2e-36 155.2 162 50.0
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 6.8e-36 154.8 99 72.7
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.5e-35 153.7 142 57.0
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 7.5e-35 151.4 171 49.7
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.2e-34 149.8 200 43.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 3.7e-34 149.1 151 53.6
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 8.3e-34 147.9 148 54.1
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.2e-33 146.0 182 46.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 5.4e-33 145.2 183 43.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 3.5e-32 142.5 163 49.1
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 4.6e-32 142.1 112 58.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 4.6e-32 142.1 210 45.2
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 7.8e-32 141.4 110 60.9
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 7.8e-32 141.4 138 57.2
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.3e-31 139.8 230 37.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 2.5e-30 136.3 209 40.2
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.2e-29 134.0 172 49.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.8e-29 132.9 195 42.1
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.4e-28 130.6 128 51.6
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 4.0e-28 129.0 169 43.2
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.0e-27 126.7 202 36.6
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 5.8e-27 125.2 179 42.5
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 7.6e-27 124.8 209 36.4
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-26 124.0 177 40.1
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.7e-26 123.6 179 41.9
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.7e-26 123.6 207 36.2
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.2e-26 123.2 179 41.9
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.6e-24 117.1 105 57.1
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 3.5e-24 115.9 293 32.8
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 5.1e-23 112.1 186 36.6
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.1e-23 112.1 190 38.9
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.5e-22 109.8 218 32.6
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 4.3e-22 109.0 138 42.8
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.2e-21 107.5 182 38.5
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.1e-20 104.4 192 33.3
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.4e-20 103.2 77 61.0
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.4e-20 103.2 118 41.5
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-19 100.9 116 48.3
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.3e-18 97.4 145 43.4
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.4e-17 94.0 137 39.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.9e-17 93.6 107 48.6
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.1e-16 90.1 99 46.5
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 1.7e-15 87.0 61 67.2
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 9.6e-14 81.3 58 65.5
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.4e-12 76.6 239 28.5
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 3.8e-10 69.3 129 37.2
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 4.2e-09 65.9 42 69.0
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 2.7e-08 63.2 189 27.0


User provided reference genes

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