Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017027 Sechium edule HOM05D000135 ORTHO05D000816 5.5e-32 141.4 71 100.0
CsaV3_3G027200 Cucumis sativus L. HOM05D000135 ORTHO05D000816 8.3e-20 100.9 71 73.2
MELO3C032128.2 Cucumis melo HOM05D000135 ORTHO05D000816 3.1e-19 99.0 71 71.8
ClCG05G013360 Citrullus lanatus HOM05D000135 ORTHO05D000816 2.0e-18 96.3 71 73.2
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.7e-13 78.2 71 59.2
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.7e-12 76.6 70 57.1
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 2.2e-12 76.3 70 52.9
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 2.8e-12 75.9 71 54.9
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 2.8e-12 75.9 71 54.9
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 6.3e-12 74.7 65 60.0
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 6.3e-12 74.7 71 54.9
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 1.8e-11 73.2 71 53.5
Phvul.001G095600 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.8e-11 73.2 71 53.5
Lj1g0014603 Lotus japonicus HOM05D000135 ORTHO05D000816 2.4e-11 72.8 74 54.1
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 3.1e-11 72.4 71 53.5
TPR.G38330 Trifolium pratense HOM05D000135 ORTHO05D000816 4.1e-11 72.0 70 48.6
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 9.2e-11 70.9 71 52.1
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 9.2e-11 70.9 71 50.7
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 1.6e-10 70.1 65 60.0
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 2.0e-10 69.7 71 52.1
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 2.0e-10 69.7 71 50.7
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 2.7e-10 69.3 71 52.1
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 3.5e-10 68.9 64 57.8
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 3.5e-10 68.9 65 56.9
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 3.5e-10 68.9 71 52.1
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.5e-10 68.9 71 52.1
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.5e-10 68.9 68 54.4
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 4.5e-10 68.6 71 50.7
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.9e-10 68.2 71 49.3
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 5.9e-10 68.2 70 48.6
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 5.9e-10 68.2 68 52.9
Eucgr.B00125 Eucalyptus grandis HOM05D000135 ORTHO05D000816 7.8e-10 67.8 65 56.9
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 7.8e-10 67.8 65 55.4
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 7.8e-10 67.8 71 47.9
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 7.8e-10 67.8 71 47.9
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 1.0e-09 67.4 71 50.7
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.0e-09 67.4 71 52.1
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.0e-09 67.4 68 52.9
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.0e-09 67.4 68 52.9
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 1.3e-09 67.0 71 53.5
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 2.3e-09 66.2 72 50.0
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.9e-09 65.9 65 55.4
Eucgr.B00123 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.8e-09 65.5 65 55.4
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 3.8e-09 65.5 71 50.7
unitig_748.g7057 Utricularia gibba HOM05D000135 ORTHO05D000816 3.8e-09 65.5 65 55.4
Eucgr.B00124 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.0e-09 65.1 65 55.4
FvH4_5g08060 Fragaria vesca HOM05D000135 ORTHO05D000816 5.0e-09 65.1 71 50.7
FAN18G3513 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.0e-09 65.1 71 50.7
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.0e-09 65.1 63 52.4
Oeu058772.1 Olea europaea HOM05D000135 ORTHO05D000816 5.0e-09 65.1 75 49.3
RcHm_v2.0_Chr7g0190421 Rosa chinensis HOM05D000135 ORTHO05D000816 5.0e-09 65.1 71 50.7
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 5.0e-09 65.1 69 52.2
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 6.6e-09 64.7 71 50.7
FAN08G0825 Fragaria x ananassa HOM05D000135 ORTHO05D000816 8.6e-09 64.3 71 49.3
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 8.6e-09 64.3 70 50.0
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 8.6e-09 64.3 70 50.0
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 8.6e-09 64.3 63 50.8
FAN04G2593 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.1e-08 63.9 71 49.3
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.1e-08 63.9 63 52.4
Prupe.5G152700 Prunus persica HOM05D000135 ORTHO05D000816 1.1e-08 63.9 71 50.7
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 1.1e-08 63.9 71 49.3
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 1.5e-08 63.5 65 52.3
Phvul.004G055200 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.9e-08 63.2 69 50.7
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.5e-08 62.8 65 52.3
EL10Ac2g03275 Beta vulgaris HOM05D000135 ORTHO05D000816 3.3e-08 62.4 63 52.4
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 3.3e-08 62.4 69 47.8
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 3.3e-08 62.4 65 52.3
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 4.3e-08 62.0 64 53.1
Aqoxy5G03431 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 5.6e-08 61.6 64 51.6
Haze_07233 Corylus avellana HOM05D000135 ORTHO05D000816 5.6e-08 61.6 71 47.9
Lsat_1_v5_gn_8_148641 Lactuca sativa HOM05D000135 ORTHO05D000816 5.6e-08 61.6 69 47.8
Lj1g0021536 Lotus japonicus HOM05D000135 ORTHO05D000816 5.6e-08 61.6 71 49.3
Atru.chr9.1078 Acer truncatum HOM05D000135 ORTHO05D000816 7.3e-08 61.2 64 50.0
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 7.3e-08 61.2 69 49.3
FAN13G0461 Fragaria x ananassa HOM05D000135 ORTHO05D000816 9.5e-08 60.8 71 47.9
Glyma.18G177900 Glycine max HOM05D000135 ORTHO05D000816 9.5e-08 60.8 63 46.0
PGSC0003DMG400013427 Solanum tuberosum HOM05D000135 ORTHO05D000816 9.5e-08 60.8 65 46.2
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 9.5e-08 60.8 69 50.7
Cpa.g.sc171.33 Carica papaya HOM05D000135 ORTHO05D000816 1.2e-07 60.5 77 44.2
Cfa018839 Carpinus fangiana HOM05D000135 ORTHO05D000816 1.2e-07 60.5 71 46.5
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.2e-07 60.5 63 50.8
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 1.2e-07 60.5 69 50.7
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.2e-07 60.5 63 50.8
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 1.2e-07 60.5 63 50.8
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.2e-07 60.5 63 50.8
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 1.6e-07 60.1 65 52.3
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 1.6e-07 60.1 65 52.3
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 64 50.0
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 63 50.8
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 63 50.8
Peaxi162Scf00700g00017 Petunia axillaris HOM05D000135 ORTHO05D000816 1.6e-07 60.1 71 43.7
Sopen03g001050 Solanum pennellii HOM05D000135 ORTHO05D000816 1.6e-07 60.1 66 47.0
HPP92_001121 Vanilla planifolia HOM05D000135 ORTHO05D000816 1.6e-07 60.1 60 51.7
ClCG06G017800 Citrullus lanatus HOM05D000135 ORTHO05D000816 2.1e-07 59.7 65 52.3
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 63 50.8
PGR083G0211 Punica granatum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 63 54.0
Solyc03g005040.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 66 47.0
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 2.1e-07 59.7 68 50.0
CiPaw.04G035100 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.8e-07 59.3 53 60.4
CsaV3_5G028580 Cucumis sativus L. HOM05D000135 ORTHO05D000816 2.8e-07 59.3 71 46.5
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 2.8e-07 59.3 60 50.0
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 2.8e-07 59.3 64 48.4
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.8e-07 59.3 63 50.8
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 2.8e-07 59.3 63 50.8
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 2.8e-07 59.3 63 50.8
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 3.6e-07 58.9 63 49.2
CiPaw.05G177200 Carya illinoinensis HOM05D000135 ORTHO05D000816 4.7e-07 58.5 60 48.3
Glyma.04G136200 Glycine max HOM05D000135 ORTHO05D000816 4.7e-07 58.5 63 46.0
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 4.7e-07 58.5 59 55.9
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 4.7e-07 58.5 59 55.9
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 4.7e-07 58.5 63 49.2
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.7e-07 58.5 63 49.2
DCAR_013352 Daucus carota HOM05D000135 ORTHO05D000816 6.1e-07 58.2 63 47.6
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.1e-07 58.2 63 49.2
Os01g0955400 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D000816 6.1e-07 58.2 62 46.8
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 6.1e-07 58.2 63 49.2
Glyma.04G136300 Glycine max HOM05D000135 ORTHO05D000816 8.0e-07 57.8 63 44.4
TPR.G18510 Trifolium pratense HOM05D034239 ORTHO05D411961 8.0e-07 57.8 64 45.3
CiPaw.06G007400 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.0e-06 57.4 60 48.3
Nn4g22363 Nelumbo nucifera HOM05D000135 ORTHO05D000816 1.0e-06 57.4 63 49.2
Nn4g22368 Nelumbo nucifera HOM05D000135 ORTHO05D000816 1.0e-06 57.4 63 49.2
CSS0011314 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.4e-06 57.0 71 49.3
CSS0038900 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.4e-06 57.0 71 49.3
CAN.G473.85 Capsicum annuum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 71 40.8
Ciclev10022753m.g Citrus clementina HOM05D000135 ORTHO05D000816 1.4e-06 57.0 71 40.8
MBI01_g44779_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.4e-06 57.0 65 49.2
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 1.4e-06 57.0 63 49.2
Sc09g0007590 Simmondsia chinensis HOM05D000135 ORTHO05D000816 1.4e-06 57.0 63 46.0
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 1.8e-06 56.6 69 44.9
HanXRQChr12g0372341 Helianthus annuus HOM05D000135 ORTHO05D000816 1.8e-06 56.6 69 42.0
Lj7P527T50 Lonicera japonica HOM05D000135 ORTHO05D000203 1.8e-06 56.6 71 45.1
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 2.3e-06 56.2 63 47.6
HanXRQChr09g0245721 Helianthus annuus HOM05D000135 ORTHO05D000816 2.3e-06 56.2 69 42.0
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.3e-06 56.2 63 47.6
HPP92_020094 Vanilla planifolia HOM05D000135 ORTHO05D000816 2.3e-06 56.2 63 49.2
SalBow1G0017 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.0e-06 55.8 64 48.4
HPP92_019655 Vanilla planifolia HOM05D000135 ORTHO05D000816 3.0e-06 55.8 63 49.2
ATR0605G202 Amborella trichopoda HOM05D000135 ORTHO05D000816 4.0e-06 55.5 63 47.6
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 63 44.4
Os01g0955500 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D000816 4.0e-06 55.5 60 45.0
Psat0s14g0160 Pisum sativum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 56 50.0
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.0e-06 55.5 57 52.6
Prupe.1G384400 Prunus persica HOM05D000135 ORTHO05D000816 4.0e-06 55.5 60 50.0
Sopen02g038650 Solanum pennellii HOM05D000135 ORTHO05D000816 4.0e-06 55.5 71 39.4
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 63 47.6
Zm00001eb137510 Zea mays HOM05D000135 ORTHO05D000816 4.0e-06 55.5 62 40.3
MELO3C005319.2 Cucumis melo HOM05D000135 ORTHO05D000816 5.2e-06 55.1 71 45.1
Lsat_1_v5_gn_8_148521 Lactuca sativa HOM05D000135 ORTHO05D000816 5.2e-06 55.1 63 47.6
PSO063G4309 Papaver somniferum HOM05D000135 ORTHO05D000816 5.2e-06 55.1 63 49.2
SEGI_15944 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 5.2e-06 55.1 69 40.6
SEGI_19460 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 5.2e-06 55.1 69 40.6
CANSAT80G0027 Cannabis sativa HOM05D000135 ORTHO05D000816 6.8e-06 54.7 62 50.0
CANSAT80G1445 Cannabis sativa HOM05D000135 ORTHO05D000816 6.8e-06 54.7 62 50.0
Duzib251G0191 Durio zibethinus HOM05D000135 ORTHO05D000203 6.8e-06 54.7 63 42.9
ECA233G5533 Erigeron canadensis HOM05D000135 ORTHO05D000816 6.8e-06 54.7 63 46.0
FAN20G1079 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.8e-06 54.7 60 48.3
Glyma.16G214500 Glycine max HOM05D000005 ORTHO05D000294 6.8e-06 54.7 60 46.7
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 6.8e-06 54.7 57 54.4
TAR622G0333 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.8e-06 54.7 67 43.3
TAR628G0482 Trochodendron aralioides HOM05D000135 ORTHO05D000816 6.8e-06 54.7 62 46.8
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 6.8e-06 54.7 57 52.6
BcaB02g07071 Brassica carinata HOM05D000135 ORTHO05D000816 8.9e-06 54.3 69 42.0
PGR004G1071 Punica granatum HOM05D000227 ORTHO05D000451 8.9e-06 54.3 61 49.2
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 8.9e-06 54.3 54 51.9
HPP92_020096 Vanilla planifolia HOM05D000135 ORTHO05D000816 8.9e-06 54.3 63 49.2


User provided reference genes

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